View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO5928A-LTR4-TNT-insertion-4 (Length: 302)

Name: SO5928A-LTR4-TNT-insertion-4
Description: SO5928A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO5928A-LTR4-TNT-insertion-4
SO5928A-LTR4-TNT-insertion-4
[»] scaffold0043 (6 HSPs)
scaffold0043 (12-293)||(29213-29494)
scaffold0043 (12-293)||(44071-44352)
scaffold0043 (122-216)||(50850-50944)
scaffold0043 (119-285)||(45913-46079)
scaffold0043 (149-285)||(31055-31191)
scaffold0043 (13-67)||(50754-50808)
[»] scaffold1163 (1 HSPs)
scaffold1163 (12-289)||(934-1198)
[»] chr2 (1 HSPs)
chr2 (12-289)||(22395530-22395794)
[»] chr3 (19 HSPs)
chr3 (113-289)||(27387929-27388105)
chr3 (119-281)||(28006506-28006668)
chr3 (119-216)||(28085654-28085751)
chr3 (120-216)||(26631340-26631436)
chr3 (13-80)||(27387842-27387909)
chr3 (119-265)||(19482365-19482511)
chr3 (119-289)||(27380558-27380728)
chr3 (122-216)||(27350744-27350838)
chr3 (119-226)||(26632165-26632272)
chr3 (13-83)||(27380751-27380821)
chr3 (13-83)||(19478162-19478232)
chr3 (19-73)||(26631470-26631524)
chr3 (128-289)||(19477969-19478130)
chr3 (13-67)||(27981182-27981236)
chr3 (13-54)||(27350893-27350934)
chr3 (122-228)||(27981032-27981140)
chr3 (13-55)||(27380924-27380966)
chr3 (14-83)||(28006691-28006760)
chr3 (19-67)||(26632310-26632358)
[»] chr5 (1 HSPs)
chr5 (122-228)||(6164269-6164375)
[»] scaffold1805 (1 HSPs)
scaffold1805 (13-83)||(23-93)


Alignment Details
Target: scaffold0043 (Bit Score: 282; Significance: 1e-158; HSPs: 6)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 293
Target Start/End: Complemental strand, 29494 - 29213
Alignment:
Q  12 cgaagactttaaattagaaaagccttctgttgccaaattcctcgcaagttcagcttttcttaagtcgacctcagttgttcactactgacttctgttgcgt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29494 cgaagactttaaattagaaaagccttctgttgccaaattcctcgcaagttcagcttttcttaagtcgacctcagttgttcactactgacttctgttgcgt 29395  T
Q  112 ggaagaaaattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatct 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29394 ggaagaaaattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatct 29295  T
Q  212 atttgattctcaagatcttccaactgttttcttagttcatcaatttccaaagagcgtttatgtatctgagcattggcaattg 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29294 atttgattctcaagatcttccaactgttttcttagttcatcaatttccaaagagcgtttatgtatctgagcattggcaattg 29213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 293
Target Start/End: Complemental strand, 44352 - 44071
Alignment:
Q  12 cgaagactttaaattagaaaagccttctgttgccaaattcctcgcaagttcagcttttcttaagtcgacctcagttgttcactactgacttctgttgcgt 111  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44352 cgaagactttaaattagaaaagctttctgttgccaaattccttgcaagttcagcttttcttaagtcgacctcagttgttcactactgacttctgttgcgt 44253  T
Q  112 ggaagaaaattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatct 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44252 ggaagaaaattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatct 44153  T
Q  212 atttgattctcaagatcttccaactgttttcttagttcatcaatttccaaagagcgtttatgtatctgagcattggcaattg 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44152 atttgattctcaagatcttccaactgttttcttagttcatcaatttccaaagagcgtttatgtatctgagcattggcaattg 44071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 50850 - 50944
Alignment:
Q  122 tctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatctatttg 216  Q
    ||||| |||||||||||||| ||| |||||||||| |||||||  | |||||| |||| ||||||||||||||||| |||||||||||| |||||    
T  50850 tctttgctttgttgtgcccattcagtgcattcagccttcaacttctgcttctgaacataacatttgttcactactgacttcaaatcatcaatttg 50944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 285
Target Start/End: Complemental strand, 46079 - 45913
Alignment:
Q  119 aattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatctatttgat 218  Q
    ||||||||||||||||| ||||||| |   |||||||| |||||||  | ||| ||  ||||||||| ||||| ||| |   | ||||||| | ||||||    
T  46079 aattctttactttgttgggcccacttagaacattcagccttcaacttcttcttttgatcatcacattggttcattacagaaattaaatcatttctttgat 45980  T
Q  219 tctcaagatcttccaactgttttcttagttcatcaatttccaaagagcgtttatgtatctgagcatt 285  Q
     |||||| ||| |||||  |||||| |||||||||||||||||||||   | |||||||||||||||    
T  45979 gctcaaggtctgccaaccattttctaagttcatcaatttccaaagagatctcatgtatctgagcatt 45913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 285
Target Start/End: Complemental strand, 31191 - 31055
Alignment:
Q  149 cattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatctatttgattctcaagatcttccaactgttttcttagtt 248  Q
    |||||||| |||||||  | ||||||  ||||||||| ||||| ||| |   | ||||||| | |||||| |||||| ||| |||||| |||||| ||||    
T  31191 cattcagccttcaacttcttcttctgatcatcacattggttcattacagaaattaaatcatttctttgatgctcaaggtctgccaacttttttctaagtt 31092  T
Q  249 catcaatttccaaagagcgtttatgtatctgagcatt 285  Q
    |||||||||||||||||   | |||||||||||||||    
T  31091 catcaatttccaaagagatctcatgtatctgagcatt 31055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 50754 - 50808
Alignment:
Q  13 gaagactttaaattagaaaagccttctgttgccaaattcctcgcaagttcagctt 67  Q
    ||||| |||||||||| |||||||||||||||||||||||||  | |||||||||    
T  50754 gaagattttaaattagcaaagccttctgttgccaaattcctcatacgttcagctt 50808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 1198 - 934
Alignment:
Q  12 cgaagactttaaattagaaaagccttctgttgccaaattcctcgcaagttcagcttttcttaagtcgacctcagttgttcactactgacttctgttgcgt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||| |||| |  | | ||    |||          
T  1198 cgaagactttaaattagaaaagccttctgttgccaaattcctcgcacgctcagcttctcttaagtcgacctcggttgatg-caagtg----ctg------ 1110  T
Q  112 ggaagaaaattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatct 211  Q
      ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  1109 --aagcaaattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgaacatcacatttgtttactactgacttcaaatcatct 1012  T
Q  212 atttgattctcaagatcttccaactgttttcttagttcatcaatttccaaagagcgtttatgtatctgagcattggca 289  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1011 atttgattctcaagatcttccaactgttttctaagttcatcaatttccaaagagcgtttatgtatctgagcattggca 934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 22395794 - 22395530
Alignment:
Q  12 cgaagactttaaattagaaaagccttctgttgccaaattcctcgcaagttcagcttttcttaagtcgacctcagttgttcactactgacttctgttgcgt 111  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| ||||| |||| |            |   |||      
T  22395794 cgaagactttaaattagaaaagccttctgctgccaaattcctcgcacgttcagcttctcttaagtcaacctcggttgatg-----------caagtgca- 22395707  T
Q  112 ggaagaaaattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatct 211  Q
     |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  22395706 -gaagcaaattctttactttgttgtgcccactcactgcattcagtgttcaactcttccttctgaacatcacatttgttcactactgacttcaaatcatct 22395608  T
Q  212 atttgattctcaagatcttccaactgttttcttagttcatcaatttccaaagagcgtttatgtatctgagcattggca 289  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22395607 atttgattctcaagatcttccaactgttttctaagttcatcaatttccaaagagcgtttatgtatctgagcattggca 22395530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 6e-74; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 113 - 289
Target Start/End: Original strand, 27387929 - 27388105
Alignment:
Q  113 gaagaaaattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatcta 212  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||||||||||||    
T  27387929 gaagcaaattctttacttttttgtgcccactcactgcattcagcgttcaactcttccttctgaacattacatctgttcactactgacttcaaatcatcta 27388028  T
Q  213 tttgattctcaagatcttccaactgttttcttagttcatcaatttccaaagagcgtttatgtatctgagcattggca 289  Q
    ||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  27388029 tttgattctcaagatcttctaactgttttctaagttcatcagtttccaaagagcgtttatgtatctgagcattggca 27388105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 119 - 281
Target Start/End: Complemental strand, 28006668 - 28006506
Alignment:
Q  119 aattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatctatttgat 218  Q
    ||||||||||||||||||||||||||   ||||||||| |||||||    |||||| ||||| ||| |||||||| ||| ||||||||||||| || | |    
T  28006668 aattctttactttgttgtgcccactccgcgcattcagccttcaacttgctcttctgaacatcgcatgtgttcacttctgacttcaaatcatctcttcgtt 28006569  T
Q  219 tctcaagatcttccaactgttttcttagttcatcaatttccaaagagcgtttatgtatctgag 281  Q
    |||||||||||||||||| |||||| |||||||||||||  |||||| | | |||||||||||    
T  28006568 tctcaagatcttccaacttttttctaagttcatcaatttgtaaagagagctcatgtatctgag 28006506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 28085751 - 28085654
Alignment:
Q  119 aattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatctatttg 216  Q
    |||||||||||||| |||||||| ||| |||||||||| ||||||| ||||||||| |||||||||||||||| ||||| ||||||||  ||||||||    
T  28085751 aattctttactttgctgtgcccattcagtgcattcagccttcaacttttccttctgaacatcacatttgttcagtactgacttcaaattgtctatttg 28085654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 26631436 - 26631340
Alignment:
Q  120 attctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatctatttg 216  Q
    |||||||||||||||||||||||||| | |||||||| |||||||  |||||||| ||||||||||||||||  |||| |||||||||||| |||||    
T  26631436 attctttactttgttgtgcccactcagtacattcagccttcaacttatccttctgaacatcacatttgttcaggactgacttcaaatcatcaatttg 26631340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 27387842 - 27387909
Alignment:
Q  13 gaagactttaaattagaaaagccttctgttgccaaattcctcgcaagttcagcttttcttaagtcgac 80  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  27387842 gaagactttaaattagaaaagccttctgttgccaaattcctagcacgttcagcttctcttaagtcgac 27387909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 265
Target Start/End: Original strand, 19482365 - 19482511
Alignment:
Q  119 aattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatctatttgat 218  Q
    ||||||| ||||||||| ||||||| |   |||||||| |||||||  | | |||| |||||||||| ||||| |||||  |||||||||||| ||||||    
T  19482365 aattcttcactttgttgggcccacttagaacattcagccttcaacttcttcatctgaacatcacattggttcaatactgaattcaaatcatctctttgat 19482464  T
Q  219 tctcaagatcttccaactgttttcttagttcatcaatttccaaagag 265  Q
    ||||||| ||| |||||| ||| || ||||||||||||| |||||||    
T  19482465 tctcaaggtctgccaactttttcctaagttcatcaatttgcaaagag 19482511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 289
Target Start/End: Complemental strand, 27380728 - 27380558
Alignment:
Q  119 aattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatctatttgat 218  Q
    |||||||| |||||||| ||||||||| | |||||||| |||||||    |||||| ||||  || ||||||| ||||| ||||||||| ||| ||||||    
T  27380728 aattctttgctttgttgagcccactcagtacattcagccttcaacttgatcttctgaacattgcaattgttcaatactgacttcaaatcttctctttgat 27380629  T
Q  219 tctcaagatcttccaactgttttcttagttcatcaatttccaaagagcgtttatgtatctgagcattggca 289  Q
    |||||| ||||||||||| |||| |  | ||||||||||  |||||| | | || |||| |||||||||||    
T  27380628 tctcaatatcttccaacttttttgtatgctcatcaatttgaaaagagagctcatctatccgagcattggca 27380558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 27350838 - 27350744
Alignment:
Q  122 tctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatctatttg 216  Q
    ||||| |||||  ||||||| ||| |||||||||| |||||||  | |||||| |||||||||||||||||||||| |||||||||||| |||||    
T  27350838 tctttgctttgcagtgcccattcagtgcattcagccttcaacttctgcttctgaacatcacatttgttcactactgacttcaaatcatcaatttg 27350744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 26632272 - 26632165
Alignment:
Q  119 aattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatctatttgat 218  Q
    |||||| |||||||||||||||||| |   |||||||| |||| || || |||||| |||||||||| ||||| | ||| ||||||||| ||| ||||||    
T  26632272 aattctctactttgttgtgcccacttagaacattcagccttcagctttttcttctgaacatcacattagttcaatgctgacttcaaatcctctctttgat 26632173  T
Q  219 tctcaaga 226  Q
    ||||||||    
T  26632172 tctcaaga 26632165  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 27380821 - 27380751
Alignment:
Q  13 gaagactttaaattagaaaagccttctgttgccaaattcctcgcaagttcagcttttcttaagtcgacctc 83  Q
    |||||||||||||| | ||||||||||||||||| ||||||| || ||||||||| ||||| |||||||||    
T  27380821 gaagactttaaatttgcaaagccttctgttgccagattcctcacacgttcagcttctcttacgtcgacctc 27380751  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 19478232 - 19478162
Alignment:
Q  13 gaagactttaaattagaaaagccttctgttgccaaattcctcgcaagttcagcttttcttaagtcgacctc 83  Q
    |||||||| ||||  | ||||||||||||||||| |||||||||| ||||||||| ||||| |||||||||    
T  19478232 gaagacttcaaatctgcaaagccttctgttgccagattcctcgcacgttcagcttctcttacgtcgacctc 19478162  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 26631524 - 26631470
Alignment:
Q  19 tttaaattagaaaagccttctgttgccaaattcctcgcaagttcagcttttctta 73  Q
    |||||||| | ||||||||||||||| |||||||||||||||||||||| |||||    
T  26631524 tttaaatttgcaaagccttctgttgcgaaattcctcgcaagttcagcttctctta 26631470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 289
Target Start/End: Complemental strand, 19478130 - 19477969
Alignment:
Q  128 ctttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatctatttgattctcaagat 227  Q
    |||||||| ||||||||| | |||||||| |||||||  | |||||  ||||  ||| |||||||||||  ||||||| | ||| ||||||||| || ||    
T  19478130 ctttgttgagcccactcagtacattcagccttcaacttgttcttctcaacattgcatctgttcactactcacttcaaagcttctctttgattcttaatat 19478031  T
Q  228 cttccaactgttttcttagttcatcaatttccaaagagcgtttatgtatctgagcattggca 289  Q
    ||||||||| ||||||  | |||||| |||  |||||| | | || |||| |||||||||||    
T  19478030 cttccaactcttttctatgctcatcagtttgtaaagagagctcatctatccgagcattggca 19477969  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 27981236 - 27981182
Alignment:
Q  13 gaagactttaaattagaaaagccttctgttgccaaattcctcgcaagttcagctt 67  Q
    ||||| |||||||||| ||||||||||||| |||||||||||| | |||||||||    
T  27981236 gaagattttaaattagcaaagccttctgtttccaaattcctcgtacgttcagctt 27981182  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 27350934 - 27350893
Alignment:
Q  13 gaagactttaaattagaaaagccttctgttgccaaattcctc 54  Q
    ||||| |||||||||| |||||||||||||||||||||||||    
T  27350934 gaagattttaaattagcaaagccttctgttgccaaattcctc 27350893  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 27981140 - 27981032
Alignment:
Q  122 tctttactttgttgtgcccactcactgcattcagcgttcaactctt--ccttctgtacatcacatttgttcactactgccttcaaatcatctatttgatt 219  Q
    ||||||||||| |||||||| ||| |||||||| | |||||   ||  ||||||| ||| |||||||||| ||||| | ||||||||||||| |||| ||    
T  27981140 tctttactttgctgtgcccattcaatgcattcaaccttcaatatttcaccttctgaacaacacatttgtttactacggacttcaaatcatctctttgttt 27981041  T
Q  220 ctcaagatc 228  Q
    | |||||||    
T  27981040 cacaagatc 27981032  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 27380966 - 27380924
Alignment:
Q  13 gaagactttaaattagaaaagccttctgttgccaaattcctcg 55  Q
    ||||| |||||||||| ||||||||||||| ||||||||||||    
T  27380966 gaagattttaaattagcaaagccttctgttaccaaattcctcg 27380924  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 28006760 - 28006691
Alignment:
Q  14 aagactttaaattagaaaagccttctgttgccaaattcctcgcaagttcagcttttcttaagtcgacctc 83  Q
    ||||||||||||| | |||||||||| ||||||| || ||| || |||| |||| ||||| |||||||||    
T  28006760 aagactttaaatttgcaaagccttcttttgccaactttctcacacgttctgcttctcttaggtcgacctc 28006691  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 26632358 - 26632310
Alignment:
Q  19 tttaaattagaaaagccttctgttgccaaattcctcgcaagttcagctt 67  Q
    |||||||| | |||||||||| ||||||||||||||||| | |||||||    
T  26632358 tttaaatttgtaaagccttcttttgccaaattcctcgcacgctcagctt 26632310  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 6164269 - 6164375
Alignment:
Q  122 tctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatctatttgattct 221  Q
    |||||||||||||||||||| ||| |||||| |||  |||||   |||||||| ||||||||||||||||||||||  |||||||||||| |||| |||     
T  6164269 tctttactttgttgtgcccattcagtgcatttagccatcaacctctccttctgaacatcacatttgttcactactgatttcaaatcatctctttgtttca 6164368  T
Q  222 caagatc 228  Q
    |||||||    
T  6164369 caagatc 6164375  T

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Target: scaffold1805 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1805
Description:

Target: scaffold1805; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 93 - 23
Alignment:
Q  13 gaagactttaaattagaaaagccttctgttgccaaattcctcgcaagttcagcttttcttaagtcgacctc 83  Q
    |||||||||||||| | ||||||||||||||||| ||||||| || ||||||||| ||||| |||||||||    
T  93 gaagactttaaatttgcaaagccttctgttgccagattcctcacacgttcagcttctcttacgtcgacctc 23  T

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