View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5928A-LTR4-TNT-insertion-5 (Length: 486)
Name: SO5928A-LTR4-TNT-insertion-5
Description: SO5928A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5928A-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 10 - 476
Target Start/End: Complemental strand, 41655824 - 41655358
Alignment:
| Q |
10 |
caaggtattatgcctatggctctttttctttgaaatggtttcttgtgaacacttggttgggtatatatgccctgattagagttgaatctggtatttcacc |
109 |
Q |
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| T |
41655824 |
caaggtattatgcctatggctctttttctttgaaatggtttcttgtgaacacttggttgggtatatatgccctgattagagttgaatctggtatttcacc |
41655725 |
T |
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| Q |
110 |
gagggttattccggtttccctaacttggtactctacaactgatatcagatggtggtgttttaaagttatttgtctcaaacatgcttttgctgcattatcc |
209 |
Q |
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| T |
41655724 |
gagggttattccggtttccctaacttggtactctacaactgatatcagatggtggtgttttaaagttatttgtctcaaacatgcttttgctgcattatcc |
41655625 |
T |
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| Q |
210 |
ttcagcatgttttgttgactatccattggttgtattnnnnnnnnnnnnnnnnnnnnnnnnngaatccataagtagtttgattagtcaatattttcatttg |
309 |
Q |
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| T |
41655624 |
ttcagcatgttttgttgactatccattggttgtattaaaaaaagaaaaagaaaaagaaaaggaatccataagtagtttgattagtcaatattttcatttg |
41655525 |
T |
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| Q |
310 |
tatctatggctaaaatcaaccctgaatgatgcatagagaccatttacaacttaactaaaattctgaactgaacagacaatggatttgcacatgaagaaat |
409 |
Q |
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| T |
41655524 |
tatctatggctaaaatcaaccctgaatgatgcatagagaccatttacaacttaactaaaattctgaactgaacagacaatggatttgcacatgaagaaat |
41655425 |
T |
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| Q |
410 |
gataagaggtacgcaaccatttcttcatcaataccatttcatctacataataaaagtaacacgatta |
476 |
Q |
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| T |
41655424 |
gataagaggtacgcaaccatttcttcatcaataccatttcatctacataataaaagtaacacgatta |
41655358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 280 - 437
Target Start/End: Complemental strand, 41647971 - 41647814
Alignment:
| Q |
280 |
agtagtttgattagtcaatattttcatttgtatctatggctaaaatcaaccctgaatgatgcatagagaccatttacaacttaactaaaattctgaactg |
379 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| || ||| || |||||||||||||||||||||||||||||||||||| |||| | |
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| T |
41647971 |
agtaatttgattagtcaatattttcatttgtatctatggccggaaataactgtgtatgatgcatagagaccatttacaacttaactaaaatgttgaatta |
41647872 |
T |
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| Q |
380 |
aacagacaatggatttgcacatgaagaaatgataagaggtacgcaaccatttcttcat |
437 |
Q |
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| T |
41647871 |
aacagccaatggatttgcacaagaaaaaatgagacaaggtactcaattatttcttcat |
41647814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 41648013 - 41647972
Alignment:
| Q |
177 |
atttgtctcaaacatgcttttgctgcattatccttcagcatg |
218 |
Q |
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| T |
41648013 |
atttgtctcaaacatggttttggtgcattatccttcatcatg |
41647972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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