View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5928A-LTR4-TNT-insertion-6 (Length: 67)
Name: SO5928A-LTR4-TNT-insertion-6
Description: SO5928A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5928A-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 50; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 3061401 - 3061352
Alignment:
| Q |
8 |
ctaaatgccaaattttccacttcatttgtgctgccaacgctacaagaatt |
57 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3061401 |
ctaaatgccaaattttccacttcatttgtgctgccaacgctacaagaatt |
3061352 |
T |
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Target: chr4 (Bit Score: 50; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 17440799 - 17440848
Alignment:
| Q |
8 |
ctaaatgccaaattttccacttcatttgtgctgccaacgctacaagaatt |
57 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17440799 |
ctaaatgccaaattttccacttcatttgtgctgccaacgctacaagaatt |
17440848 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 4876044 - 4875995
Alignment:
| Q |
8 |
ctaaatgccaaattttccacttcatttgtgctgccaacgctacaagaatt |
57 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4876044 |
ctaaatgccaaattttccacttcatttgtgctgccaacgctacaagaatt |
4875995 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 30188661 - 30188612
Alignment:
| Q |
8 |
ctaaatgccaaattttccacttcatttgtgctgccaacgctacaagaatt |
57 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
30188661 |
ctaaatgccaaattttccactttatttgtactgccaacgctacaagaatt |
30188612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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