View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5928A-LTR4-TNT-insertion-9 (Length: 574)
Name: SO5928A-LTR4-TNT-insertion-9
Description: SO5928A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5928A-LTR4-TNT-insertion-9 |
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Alignment Details
Target: chr6 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 6 - 565
Target Start/End: Complemental strand, 31649608 - 31649049
Alignment:
| Q |
6 |
caggaacaactgaagagagtaaggtctcaaaggtagttctatctatttatcttattaaaaatgatgaatccaatgttcattgcaaatttcaataactatt |
105 |
Q |
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| T |
31649608 |
caggaacaactgaagagagtaaggtctcaaaggtagttctatctatttatcttattaaaaatgatgaatccaatgttcattgcaaatttcaataactatt |
31649509 |
T |
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| Q |
106 |
catattagtaccaaaaaatatatttatcatagggaaatgtttgtcacaggtcgttcttacaagtcagattcaacagttgaaggtaatgttctcttaacat |
205 |
Q |
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| T |
31649508 |
catattagtaccaaaaaatatatttatcatagggaaatgtttgtcacaggtcgttcttacaagtcagattcaacagttgaaggtaatgttctcttaacat |
31649409 |
T |
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| Q |
206 |
atcaattcatagatttgaatttccggcagcgagaaatctgtatatttatgcagtcatcacgtcaaaagtagtggatcaagatagtatatatggtccatat |
305 |
Q |
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| T |
31649408 |
atcaattcatagatttgaatttccggcagcgagaaatctgtatatttatgcagtcatcacgtcaaaagtagtggatcaagatagtatatatggtccatat |
31649309 |
T |
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| Q |
306 |
tttaagtttgtatttctgcttttttaacaaaatttggaccgtttgatctcgattccttcaacgactactgacatggtggctacatgaatttgtggatttt |
405 |
Q |
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| T |
31649308 |
tttaagtttgtatttctgcttttttaacaaaatttggaccgtttgatctcgattccttcaacgactactgacatggtggctacatgaatttgtggatttt |
31649209 |
T |
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| Q |
406 |
ctgagtgaatcaaatcaaaatccatcaattcacatccactttttgagacaatgtataatttttgtataatttttgcttcatgagatatttggcaccacaa |
505 |
Q |
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| T |
31649208 |
ctgagtgaatcaaatcaaaatccatcaattcacatccactttttgagacaatgtataatttttgtataatttttgcttcatgagatatttggcaccacaa |
31649109 |
T |
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| Q |
506 |
tgcagaatgagaatatcataaaggaagnnnnnnntgcacatgatcactcaaaaccaattg |
565 |
Q |
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| T |
31649108 |
tgcagaatgagaatatcataaaggaagaaaaaaatgcacatgatcactcaaaaccaattg |
31649049 |
T |
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