View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5945A-LTR4-TNT-insertion-4 (Length: 215)
Name: SO5945A-LTR4-TNT-insertion-4
Description: SO5945A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5945A-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 38693830 - 38694024
Alignment:
| Q |
11 |
cgtatagattgttttaatttcttaacttgtgcaatttaattatttttattcctatgcatcttgttcacatttattaacttgggtcaaattcgcctaatta |
110 |
Q |
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| T |
38693830 |
cgtatagattgttttaatttcttaacttgtgcaatttaattatttttattcctatgcatcttgttcacatttattaacttgggtcaaattcgcctaatta |
38693929 |
T |
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| Q |
111 |
ggatactctagctgtgccaatgggaagaagccccagggtttgacatccttctaatttctaagattggcagggctttatatatcctttatagaatt |
205 |
Q |
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| T |
38693930 |
ggatactctagctgtgccaatgggaagaagccccagggtttgacatccttctaatttctaagattggcagggctttatatatcctttatagaatt |
38694024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 38875242 - 38875146
Alignment:
| Q |
16 |
agattgttttaatttcttaacttgtgcaatttaattatttttattcctatgcatcttgttcacatttattaactt---gggtcaaattcgcctaatt |
109 |
Q |
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| T |
38875242 |
agattgttttagttttttaacttgtgcaattgaattacttctattcatatgcatcttgttcacatttatcaccttaaggggtcaaattcgcctaatt |
38875146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 201
Target Start/End: Complemental strand, 38875039 - 38875004
Alignment:
| Q |
166 |
ttctaagattggcagggctttatatatcctttatag |
201 |
Q |
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| T |
38875039 |
ttctaagattggcagggctttatatatcctttatag |
38875004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 38875131 - 38875076
Alignment:
| Q |
108 |
ttaggatactctagctgtgccaatgggaagaagccccagggtttgacatccttctaa |
164 |
Q |
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| T |
38875131 |
ttaggatactccatctgtaccaattggaagaagccccaggg-ttgacatccttctaa |
38875076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 201
Target Start/End: Complemental strand, 9820835 - 9820800
Alignment:
| Q |
166 |
ttctaagattggcagggctttatatatcctttatag |
201 |
Q |
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| T |
9820835 |
ttctaagattagcagggctttatatatcctttatag |
9820800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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