View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5945A-LTR4-TNT-insertion-7 (Length: 604)
Name: SO5945A-LTR4-TNT-insertion-7
Description: SO5945A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5945A-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 8 - 594
Target Start/End: Complemental strand, 869191 - 868605
Alignment:
| Q |
8 |
aaacgttccataatcttaggatccttgaagttgttggggcaagagtcgaggatgctgcagtaaatgcaatgattcaggcctgtccaaatctgacaaggtt |
107 |
Q |
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| T |
869191 |
aaacgttccataatcttaggatccttgaagttgttggggcaagagtcgaggatgctgcagtaaatgcaatgattcaggcctgtccaaatctgacaaggtt |
869092 |
T |
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| Q |
108 |
actactgcttggatgtgaaggtgtccgatcaatttcgatcaccctgccatttttggagcagtgcaagctggatttttatggtcttgggaactgttcgctt |
207 |
Q |
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| T |
869091 |
actactgcttggatgtgaaggtgtccgatcaatttcgatcaccctgccatttttggagcagtgcaagctggatttttatggtcttgggaactgttcgctt |
868992 |
T |
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| Q |
208 |
tcactgacctcccctaaaattgaatctcttgaggtacaaggctgtagttggattagggtccctgaaaccaagcatttgaagaacctttcaatttccaaca |
307 |
Q |
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| T |
868991 |
tcactgacctcccctaaaattgaatctcttgaggtacaaggctgtagttggattagggtccctgaaaccaagcatttgaagaacctttcaatttccaaca |
868892 |
T |
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| Q |
308 |
gtgcaggtagtcgaatgtttcaagtgattcttgtactttcatatttcttactgacctttgttttttattgctctcttggaatttactaaaaagtgattgc |
407 |
Q |
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| T |
868891 |
gtgcaggtagtcgaatgtttcaagtgattcttgtactttcatatttcttactgacctttgttttttattgctctcttggaatttactaaaaagtgattgc |
868792 |
T |
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| Q |
408 |
ctttgtaagctcaattttctttctttacttgtttattgcttgcagggagagtatacatgattgattttgggaaccttgcatccctggagtttctgtcaat |
507 |
Q |
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| T |
868791 |
ctttgtaagctcaattttctttctttacttgtttattgcttgcagggagagtatacatgattgattttgggaaccttgcatccctggagtttctgtcaat |
868692 |
T |
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| Q |
508 |
gagggggatacagtggtgttgggatgcaatctgtaaaatgctgaaattggcaagtgatgtgaaacatctttatatgaaggttgaatt |
594 |
Q |
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| T |
868691 |
gagggggatacagtggtgttgggatgcaatctgtaaaatgctgaaattggcaagtgatgtgaaacatctttatatgaaggttgaatt |
868605 |
T |
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