View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5945A-LTR4-TNT-insertion-8 (Length: 578)
Name: SO5945A-LTR4-TNT-insertion-8
Description: SO5945A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5945A-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Complemental strand, 33576847 - 33576414
Alignment:
| Q |
10 |
tactgcctcttgagcatcatcatagttataattttttgaggatattcatgtttgttgtttacaagtcttttgatgatgttatagattgattaaatcggtg |
109 |
Q |
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| T |
33576847 |
tactgcctcttgagcatcatcatagttataattttttgaggatattcatgtttgttgtttacaagtcttttgatgatgttatagattgattaaatcggtg |
33576748 |
T |
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| Q |
110 |
tttttgtggttcttgagaaaagaagatcaaagattttgataattgatagtttaataatggatgtttttgtgatgannnnnnnnagacttctgagttaaaa |
209 |
Q |
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| T |
33576747 |
tttttgtggttcttgagaaaagaagatcaaagattttgataattgatagtttaataatggatgtttttgtgatgattttttttagacttctgagttaaaa |
33576648 |
T |
|
| Q |
210 |
tgaatcatactgcactgtatcatttggtgtttataccgatgtccatttggactgaatagtttcataattcgtaccatttggcgtttataccaatgtcctc |
309 |
Q |
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| T |
33576647 |
tgaatcatactgcactgtatcatttggtgtttataccgatgtccatttggattgaatagtttcataattcgtaccatttggcgtttataccaatgtcctc |
33576548 |
T |
|
| Q |
310 |
tacagaacattttgattcattgttatgttacttatcatttgatattgtcatgctatcaatctattggattggaattgtctgagacaactgaacttgttta |
409 |
Q |
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| T |
33576547 |
tacagaacattttgattcattgttatgttacttatcatttgatattgtcatgctatcaatctattggattggaattgtctgagacaactgaacttgttta |
33576448 |
T |
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| Q |
410 |
tgttgctcttaagttctggtttgattttcatcag |
443 |
Q |
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| T |
33576447 |
tgttgctcttaagttctggtttgattttcatcag |
33576414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 466 - 568
Target Start/End: Complemental strand, 33576390 - 33576288
Alignment:
| Q |
466 |
gttgaatgttacttgtttgtgattaaggcttgatgaaatatgtaaactgtaacatgccaaacaaatgttcttgagaaaagatatggtcatcagtatatga |
565 |
Q |
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| T |
33576390 |
gttgaatgttacttgtttgtgattaaggcttgatgaaatatgtaaactgtaacatgccaaacaaatgttcttgagaaaagatatggtcatcagtatatga |
33576291 |
T |
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| Q |
566 |
att |
568 |
Q |
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| T |
33576290 |
att |
33576288 |
T |
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