View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO6003A-LTR4-TNT-insertion-3 (Length: 304)
Name: SO6003A-LTR4-TNT-insertion-3
Description: SO6003A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO6003A-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 42154970 - 42155257
Alignment:
| Q |
8 |
caaatactctagcataccttttctattcttatctgttcaaggagtttacttttgtgacagacaagaatctcgtgcttgcaatctttccaatctaatttag |
107 |
Q |
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| T |
42154970 |
caaatactctagcataccttttctattcttatctgttcaaggagtttacttttgtgacagacaagaatcttgtgcttgcaatctttccaatctaatttag |
42155069 |
T |
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| Q |
108 |
aataaatcatgtgaaaaatgaaaagcctaagatggaagtattaccaactttttcttttgaaaagttagtgccaacaaaagaaacattaatacttggcacc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42155070 |
aataaatcatgtgaaaaatgaaaagcctaagatggaagtattaccaactttttcttttgaaaagttagtgccaacaaaagaaacattaatacttggcacc |
42155169 |
T |
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| Q |
208 |
aaattgggattaaaaaataaattgtgaaacctgtttgtgtgttacaagttaaattagagaacaagttatatttatagttgtgcaattg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42155170 |
aaattgggattaaaaaataaattgtgaaacctgtttgtgtgttacaagttaaattagagaacaagttatatttatagttgtgcaattg |
42155257 |
T |
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