View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO6003A-LTR4-TNT-insertion-6 (Length: 427)
Name: SO6003A-LTR4-TNT-insertion-6
Description: SO6003A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO6003A-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 8 - 417
Target Start/End: Original strand, 29925608 - 29926017
Alignment:
| Q |
8 |
catacaaccgttttcaaccttttctttctgttcagtaaatccatctatttaactagttacaatgcagatatcgttaagtgactagaacttaggacaatcg |
107 |
Q |
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| T |
29925608 |
catacaaccgttttcaaccttttctttctgttcagtaaatccatctatttaactagttacaatgcagatatcgttaagtgactagaacttaggacaatcg |
29925707 |
T |
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| Q |
108 |
atgatagtgcttgtcaaattatgttggtcttgtgagaatgattaaaaatctggatagacatattagacagaaataatcttactgacattcaaaaaagaca |
207 |
Q |
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| T |
29925708 |
atgatagtgcttgtcaaattatgttggtcttgtgaaaatgattaaaaatctggatagacatattagacagaaataatcttactgacattcaaaaaagaca |
29925807 |
T |
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| Q |
208 |
ctagagtagtgtacatgcttcaacagtcttaataaatagcatgtcttttgcattactctttcgcattacatggtattttcctacattactatgtttaggc |
307 |
Q |
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| T |
29925808 |
ctagagtagtgtacatgcttcaacagtcttaataaatagcatgtcttttgcattactctttcgcattacatggtattttcctacattactatgtttaggc |
29925907 |
T |
|
| Q |
308 |
aatgttcatctgtgcctttgatattttgtttcttattgataacaaggaataataaatcaactctttggtttgttcaaactaaaatggaaaagataaaatt |
407 |
Q |
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| T |
29925908 |
aatgttcatctgtgcctttgatattttgtttcttattgataacaaggaataataaatcaactctttggtttgttcaaactaaaatggaaaagataaaatt |
29926007 |
T |
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| Q |
408 |
gaccacatta |
417 |
Q |
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| T |
29926008 |
gaccacatta |
29926017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 64 - 245
Target Start/End: Original strand, 28279656 - 28279831
Alignment:
| Q |
64 |
ttacaatgcagatatcgttaagtgactagaacttaggacaatcgatgatagtgcttgtcaaattatgttggtcttgtgagaatgattaaaaatctggata |
163 |
Q |
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|||||||||||||||| | |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| || || |||||||||||||| |
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| T |
28279656 |
ttacaatgcagatatcat-aagtgactagaatttaggacaatcaatgat------tgtcaaattatgttggtcttgtggaaacgagtaaaaatctggata |
28279748 |
T |
|
| Q |
164 |
gacatattagacagaaataatcttactgacattc-aaaaaagacactagagtagtgtacatgcttcaacagtcttaataaata |
245 |
Q |
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| T |
28279749 |
gacatatttgacagaaataatcttactgacattcaaaaaaagacgctagggtagcatacatgcttcaccagtcttaataaata |
28279831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 28279590 - 28279631
Alignment:
| Q |
20 |
ttcaaccttttctttctgttcagtaaatccatctatttaact |
61 |
Q |
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| T |
28279590 |
ttcaaacttttctttctgtttagtaaatccatctatttaact |
28279631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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