View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO6103A-LTR4-TNT-insertion-1 (Length: 172)
Name: SO6103A-LTR4-TNT-insertion-1
Description: SO6103A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO6103A-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 44; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 45596300 - 45596257
Alignment:
| Q |
10 |
caagcaaccatgatgtcatgcacatgcacgaaacatagtactag |
53 |
Q |
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| T |
45596300 |
caagcaaccatgatgtcatgcacatgcacgaaacatagtactag |
45596257 |
T |
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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 45596183 - 45596147
Alignment:
| Q |
127 |
caagagtgagtgattttggcaatcctaaattcaattg |
163 |
Q |
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| T |
45596183 |
caagagtgagtgattttggcaatcctaaattcaattg |
45596147 |
T |
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