View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO6103A-LTR4-TNT-insertion-3 (Length: 615)

Name: SO6103A-LTR4-TNT-insertion-3
Description: SO6103A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO6103A-LTR4-TNT-insertion-3
SO6103A-LTR4-TNT-insertion-3
[»] chr7 (19 HSPs)
chr7 (8-608)||(49124151-49124751)
chr7 (305-601)||(25544859-25545161)
chr7 (310-601)||(31136376-31136671)
chr7 (316-601)||(12471389-12471677)
chr7 (318-601)||(12470675-12470950)
chr7 (305-601)||(48070846-48071141)
chr7 (316-394)||(12470090-12470168)
chr7 (477-593)||(45595739-45595853)
chr7 (420-573)||(2500797-2500948)
chr7 (462-594)||(39571461-39571590)
chr7 (320-413)||(48638170-48638265)
chr7 (310-376)||(2923125-2923191)
chr7 (305-381)||(35738014-35738089)
chr7 (305-380)||(2501930-2502005)
chr7 (305-381)||(32971462-32971538)
chr7 (305-380)||(3996824-3996899)
chr7 (546-608)||(22331501-22331563)
chr7 (311-377)||(46993486-46993552)
chr7 (341-381)||(39571678-39571718)
[»] chr2 (16 HSPs)
chr2 (305-589)||(37630560-37630848)
chr2 (305-590)||(5526448-5526744)
chr2 (305-599)||(10722027-10722329)
chr2 (310-608)||(33036687-33036986)
chr2 (305-587)||(30906505-30906794)
chr2 (312-608)||(44018593-44018890)
chr2 (305-601)||(22847861-22848161)
chr2 (305-594)||(3689772-3690057)
chr2 (305-390)||(29109031-29109116)
chr2 (472-608)||(3919514-3919649)
chr2 (462-594)||(4241084-4241215)
chr2 (478-601)||(29108876-29108999)
chr2 (319-376)||(28199824-28199881)
chr2 (319-381)||(30340615-30340677)
chr2 (305-354)||(27866840-27866889)
chr2 (568-608)||(38607567-38607607)
[»] chr6 (22 HSPs)
chr6 (305-608)||(11846472-11846779)
chr6 (305-601)||(7176145-7176441)
chr6 (305-593)||(11971642-11971935)
chr6 (305-593)||(23300649-23300941)
chr6 (336-608)||(26186350-26186629)
chr6 (472-594)||(9827144-9827265)
chr6 (482-594)||(5416438-5416549)
chr6 (474-601)||(32613555-32613681)
chr6 (305-381)||(9826969-9827045)
chr6 (312-375)||(2453993-2454056)
chr6 (353-413)||(7551242-7551304)
chr6 (305-379)||(1208790-1208864)
chr6 (318-374)||(20722519-20722575)
chr6 (526-601)||(2108493-2108568)
chr6 (318-376)||(26880016-26880074)
chr6 (543-593)||(2453787-2453837)
chr6 (331-381)||(5416283-5416333)
chr6 (557-601)||(7551049-7551093)
chr6 (489-533)||(12263387-12263431)
chr6 (557-601)||(20722885-20722929)
chr6 (313-361)||(23586095-23586143)
chr6 (501-533)||(26880192-26880224)
[»] chr4 (10 HSPs)
chr4 (310-601)||(19681721-19682018)
chr4 (305-608)||(42141472-42141774)
chr4 (310-592)||(53392806-53393104)
chr4 (472-608)||(9140661-9140796)
chr4 (305-592)||(13207050-13207344)
chr4 (305-381)||(8606012-8606088)
chr4 (462-601)||(3041995-3042126)
chr4 (315-377)||(23107789-23107851)
chr4 (543-608)||(39838877-39838942)
chr4 (315-370)||(24466204-24466259)
[»] chr3 (20 HSPs)
chr3 (305-594)||(44471249-44471543)
chr3 (316-608)||(46892829-46893116)
chr3 (305-601)||(779151-779451)
chr3 (305-594)||(44681655-44681952)
chr3 (305-593)||(33231170-33231464)
chr3 (305-608)||(23659618-23659929)
chr3 (472-607)||(28550915-28551049)
chr3 (305-381)||(26757827-26757903)
chr3 (489-601)||(44285952-44286063)
chr3 (305-381)||(28550675-28550751)
chr3 (482-608)||(47830921-47831046)
chr3 (311-561)||(54246671-54246932)
chr3 (543-608)||(30553756-30553821)
chr3 (472-539)||(30554259-30554325)
chr3 (325-445)||(44285795-44285922)
chr3 (527-601)||(26918133-26918207)
chr3 (476-516)||(26918201-26918241)
chr3 (335-379)||(47831156-47831200)
chr3 (354-413)||(11690055-11690114)
chr3 (526-601)||(27524395-27524472)
[»] chr8 (15 HSPs)
chr8 (310-601)||(3767312-3767606)
chr8 (316-608)||(32322043-32322340)
chr8 (317-608)||(20860025-20860322)
chr8 (310-601)||(9505267-9505562)
chr8 (474-601)||(3555071-3555196)
chr8 (481-601)||(17913157-17913277)
chr8 (530-601)||(42614775-42614846)
chr8 (319-380)||(25343991-25344052)
chr8 (305-381)||(9040644-9040720)
chr8 (305-381)||(16570740-16570816)
chr8 (356-408)||(40434809-40434863)
chr8 (314-415)||(3555255-3555362)
chr8 (318-411)||(25455973-25456073)
chr8 (557-601)||(25343673-25343717)
chr8 (557-601)||(25654423-25654467)
[»] scaffold0590 (1 HSPs)
scaffold0590 (316-600)||(8410-8690)
[»] chr1 (12 HSPs)
chr1 (305-608)||(32678101-32678410)
chr1 (310-597)||(8414206-8414498)
chr1 (476-599)||(27320134-27320256)
chr1 (484-594)||(11911987-11912096)
chr1 (462-601)||(17531000-17531131)
chr1 (536-608)||(42616315-42616387)
chr1 (305-386)||(11911817-11911901)
chr1 (491-585)||(48640864-48640954)
chr1 (482-608)||(4635037-4635157)
chr1 (331-381)||(4919659-4919709)
chr1 (310-417)||(17530841-17530955)
chr1 (536-584)||(44581370-44581418)
[»] chr5 (9 HSPs)
chr5 (305-601)||(7238945-7239233)
chr5 (305-601)||(7244121-7244409)
chr5 (481-592)||(20665743-20665853)
chr5 (305-594)||(1497853-1498148)
chr5 (305-381)||(17770444-17770520)
chr5 (531-594)||(17770646-17770709)
chr5 (351-416)||(20665522-20665589)
chr5 (476-505)||(42306975-42307004)
chr5 (372-437)||(20665672-20665739)
[»] scaffold0002 (2 HSPs)
scaffold0002 (314-534)||(344074-344294)
scaffold0002 (564-608)||(344022-344066)
[»] scaffold1194 (1 HSPs)
scaffold1194 (335-595)||(2205-2471)
[»] scaffold0564 (1 HSPs)
scaffold0564 (305-608)||(6535-6830)
[»] scaffold0070 (3 HSPs)
scaffold0070 (318-380)||(33968-34030)
scaffold0070 (318-381)||(13991-14054)
scaffold0070 (557-601)||(34262-34306)
[»] scaffold0879 (1 HSPs)
scaffold0879 (315-370)||(469-524)
[»] scaffold0565 (1 HSPs)
scaffold0565 (319-377)||(1729-1787)


Alignment Details
Target: chr7 (Bit Score: 562; Significance: 0; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 8 - 608
Target Start/End: Original strand, 49124151 - 49124751
Alignment:
Q  8 ctatgaactattttttccattacaaagttacttagattgaacaatttgttttataaacatgtcggtattttggttgaggggtaaccaatatacatatgta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124151 ctatgaactattttttccattacaaagttacttagattgaacaatttgttttataaacatgtcggtattttggttgaggggtaaccaatatacatatgta 49124250  T
Q  108 ttgtattgggctgatgatagagggtgcttgcttgtgttctttcactcattttggaacagcttccctgacacatactttctagaatttaagtttttaaatc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124251 ttgtattgggctgatgatagagggtgcttgcttgtgttctttcactcattttggaacagcttccctgacacatactttctagaatttaagtttttaaatc 49124350  T
Q  208 attacttatactggctccttctatttttataagattactttacaaaaaagttttgtccctcctaaatataagagtatccctcctnnnnnnnnnnnnntta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||    
T  49124351 attacttatactggctccttctatttttataagattactttacaaaaaagttttgtccctcctaaatataagagtatccctcctcacacacacacactta 49124450  T
Q  308 tcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcactcacactattttatttctactaaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124451 tcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcactcacactattttatttctactaaa 49124550  T
Q  408 atagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaaagtag 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124551 atagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaaagtag 49124650  T
Q  508 tttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggatttttgtaatt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124651 tttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggatttttgtaatt 49124750  T
Q  608 g 608  Q
    |    
T  49124751 g 49124751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 305 - 601
Target Start/End: Complemental strand, 25545161 - 25544859
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatca-----tcatctcatcactc--acactattttat 397  Q
    |||| |||||||||||||||||||  ||||||||| |||||| || |||||||||||||||||| ||     ||||||||||||||  || ||||||| |    
T  25545161 ttatgattaagctcaaaattaaaggtcaacataaaatactccataattcattcactttctcccaacaccatctcatctcatcactccaaccctattttgt 25545062  T
Q  398 ttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagtta 497  Q
    |||||||||||  ||||||  || |||||||||||||||||| ||||| |||  ||  | |   ||||| ||| ||| ||||||||||||||||||||||    
T  25545061 ttctactaaaaatgaacactagccgctagtcacacctaacccatcgttcctcaccgtcgttgggatcgtccatctctcgttagttttttcatgttagtta 25544962  T
Q  498 tacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggat 597  Q
    |||||||||||||||||||  | | | |||||||||| |||||  ||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||    
T  25544961 tacaaagtagtttgaaaaacaa-acaacatgaaaaacaaagttttatgaaatatttgagtatgttgtatgcatgaaatacaaatttgtgaaaatatgaat 25544863  T
Q  598 tttt 601  Q
    ||||    
T  25544862 tttt 25544859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 310 - 601
Target Start/End: Original strand, 31136376 - 31136671
Alignment:
Q  310 attaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatct-----catcactcacactatttt--atttcta 402  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||     ||||||||||||| | ||  |||||||    
T  31136376 attaagctcaaaattaaagtccaacataaaatactccttaattcattcactttctcctatcatcatcttatctcatcactcacactctattccatttcta 31136475  T
Q  403 ctaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaa 502  Q
    |||||| | || ||   |||  | ||||||||||||  | ||| |||  |    | |  ||||| ||| |||||||||||||||||||  ||||||||||    
T  31136476 ctaaaaaa-aatactacctgtcaatcacacctaacctattgttcctcaccatcac-aggatcgtccatatcttgttagttttttcatgcaagttatacaa 31136573  T
Q  503 agtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
    ||||||||||||| ||||||| || ||||||| |||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||    
T  31136574 agtagtttgaaaa-atagagaacaagaaaaacaaagttctatgaaatatttgagtatgttgtatgcatgaaatacaaatttgtgaaaatatgaattttt 31136671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 316 - 601
Target Start/End: Complemental strand, 12471677 - 12471389
Alignment:
Q  316 ctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatc-----actcacactattttatttctactaaaata 410  Q
    |||||||||||||| || |||||| |||||||| ||| | ||||||||||||||||||||||||||     |||||| ||||||| |||||||||||| |    
T  12471677 ctcaaaattaaagttcaccataaaatactcctttgtttactcactttctcccatcatcatctcatctcatcactcactctattttgtttctactaaaaaa 12471578  T
Q  411 gaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaaagtagttt 510  Q
    |||||   ||  | |||||||| |||||| ||||| |||  ||  | |   ||||| ||| ||||||||||||||||||||||||||||||||||| |||    
T  12471577 gaacattagcgtc-agtcacacataacccatcgttcctcaccgtcgttgggatcgtccatgtcttgttagttttttcatgttagttatacaaagtaattt 12471479  T
Q  511 gaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
     |||||| | ||| |||| ||||| |||||  | ||||||||||| | |||||||| ||||||||  |||||| |||||||||||||||||    
T  12471478 -aaaaaacatagaacatggaaaacaaagttataagaaatatttgagtgtgttgtatacatgaaatataaatttctgaaaatatggattttt 12471389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 318 - 601
Target Start/End: Complemental strand, 12470950 - 12470675
Alignment:
Q  318 caaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcactcacactattttatttctactaaaatagaacacc 417  Q
    ||||||||||||||| |||||| ||||||||  ||||||||||||||||||| ||| | |        || ||||||  |||||||||||| ||||||      
T  12470950 caaaattaaagtccaccataaaatactccttgattcattcactttctcccattatcgttt--------actctatttcgtttctactaaaaaagaacatt 12470859  T
Q  418 ggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagtttttt-catgttagttatacaaagtagtttgaaaaa 516  Q
    ||  |  ||||||||||||| | | ||| ||| ||  || |  ||| || ||| ||||||||||||||| |||||||||||||||||||||||| |||||    
T  12470858 ggtcgtcagtcacacctaactcattgttcctcatcattgttggaattgtccatgtcttgttagtttttttcatgttagttatacaaagtagttt-aaaaa 12470760  T
Q  517 atagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
    | ||||| |||| ||| | |||||  | ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||    
T  12470759 acagagaacatggaaagcaaagttataagaaatatttgagtatgttgtatggatgaaatacaaatttgtgaaaatatggattttt 12470675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 305 - 601
Target Start/End: Original strand, 48070846 - 48071141
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcac-tcacac--tattttatttct 401  Q
    |||| ||||| |||||||||||||||||||||||| |||| |||| ||||||||||||||  |||| |||||| ||| | ||||||  |||||  |||||    
T  48070846 ttatgattaatctcaaaattaaagtccaacataaaatacttcttaattcattcactttctttcatcctcatcttatctcatcacactttatttcgtttct 48070945  T
Q  402 actaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttataca 501  Q
    ||||||| |||||||  || || | ||||||||||| | ||||| |||||||| |     ||||| ||  ||| |||||| ||||||||||| |||||||    
T  48070946 actaaaaaagaacactagccgccattcacacctaactcatcgttcctcgtcgccgtcgggatcgtcca--tctcgttagtattttcatgttaattataca 48071043  T
Q  502 aagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
    ||||| |||| ||||| ||| |  ||| ||||| |||||| || |||||||||| ||||| || || ||||||| ||||||||||||||||||| |||||    
T  48071044 aagtattttg-aaaaacagataatatggaaaacaaagttctat-aaatatttgattatgtagtgtgtatgaaatacaaatttgtgaaaatatggtttttt 48071141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 316 - 394
Target Start/End: Complemental strand, 12470168 - 12470090
Alignment:
Q  316 ctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcactcacactattt 394  Q
    |||||||||||||||||||||||| ||||| ||  |||||||||| |||||||||||||||||||||||||| ||||||    
T  12470168 ctcaaaattaaagtccaacataaaatactctttgattcattcactctctcccatcatcatctcatcactcactctattt 12470090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 477 - 593
Target Start/End: Original strand, 45595739 - 45595853
Alignment:
Q  477 ttagttttttcatgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatg 576  Q
    ||||||||||||||||| ||||||||||||||||| ||||  ||||| |||| ||||| |||||| ||| ||||||||| |||||||||  |||||| |     
T  45595739 ttagttttttcatgttaattatacaaagtagtttg-aaaatgagagaacatggaaaacaaagttctatg-aatatttgagtatgttgtagacatgaagta 45595836  T
Q  577 caaatttgtgaaaatat 593  Q
    |||||||||||||||||    
T  45595837 caaatttgtgaaaatat 45595853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 420 - 573
Target Start/End: Complemental strand, 2500948 - 2500797
Alignment:
Q  420 ctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaaagtagtttgaaaaaata 519  Q
    |||| ||||||||||||||| ||||| |||  || ||    |||||| ||| ||||||||||||||||||||||||||||||||||| |||| ||||| |    
T  2500948 ctgcaagtcacacctaacccatcgttcctcaccgttgtcgtaatcgtccatctcttgttagttttttcatgttagttatacaaagta-tttg-aaaaaca 2500851  T
Q  520 gagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaa 573  Q
      || |||| ||||| | |||   |||||||||||| |||||||||||||||||    
T  2500850 atgaacatggaaaacaatgttttgtgaaatatttgagtatgttgtatgcatgaa 2500797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 462 - 594
Target Start/End: Complemental strand, 39571590 - 39571461
Alignment:
Q  462 atcgttcatttcttgttagttttttcatgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgt 561  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||| ||| ||||| | ||| |||| ||||  |||||  |||||||| |||| | |||    
T  39571590 atcgtccatctcttgttagtttttt-atgttagttatacaaagtagattg-aaaaacaaagaacatggaaaataaagttatatgaaatacttgagt-tgt 39571494  T
Q  562 tgtatgcatgaaatgcaaatttgtgaaaatatg 594  Q
    |||| ||||||||| ||||||||| ||||||||    
T  39571493 tgtaagcatgaaatacaaatttgtaaaaatatg 39571461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 413
Target Start/End: Complemental strand, 48638265 - 48638170
Alignment:
Q  320 aaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcactc--acactattttatttctactaaaatagaa 413  Q
    |||||||||| ||||||||| ||||| ||| |||||||||||||| || |||||||||||||||||  ||  ||||| ||||||||||||| ||||    
T  48638265 aaattaaagttcaacataaaatactctttaattcattcactttcttccttcatcatctcatcactcggactatatttcatttctactaaaaaagaa 48638170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 2923125 - 2923191
Alignment:
Q  310 attaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatc 376  Q
    |||| |||||||||||||||||||||||||  ||| |||| |||||||||||||||||| |||||||    
T  2923125 attaggctcaaaattaaagtccaacataaaaaactacttaattcattcactttctcccaccatcatc 2923191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 305 - 381
Target Start/End: Complemental strand, 35738089 - 35738014
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatc 381  Q
    |||| |||| || |||||||||| ||||||||||| ||||||||| | ||||||| |||||||||||||||||||||    
T  35738089 ttatgattaggcccaaaattaaattccaacataaaatactccttaatccattcac-ttctcccatcatcatctcatc 35738014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 2502005 - 2501930
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcat 380  Q
    |||| |||||||| ||||||| ||| ||||||||| |||| | || ||||||| ||||||||||||||||||||||    
T  2502005 ttatgattaagctaaaaattacagtgcaacataaaatacttcataattcattccctttctcccatcatcatctcat 2501930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 381
Target Start/End: Original strand, 32971462 - 32971538
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatc 381  Q
    |||| |||| ||||||||||||||||||||||||| ||||| ||| | ||||||| | || | ||||||||||||||    
T  32971462 ttatgattaggctcaaaattaaagtccaacataaactactctttaatccattcacctacttcaatcatcatctcatc 32971538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 3996899 - 3996824
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcat 380  Q
    |||| |||| || ||||||||||||| | |||||| |||| ||||  |||||||||||||| | ||||||||||||    
T  3996899 ttatgattatgcccaaaattaaagtcaagcataaaatacttcttaagtcattcactttctctcgtcatcatctcat 3996824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 608
Target Start/End: Complemental strand, 22331563 - 22331501
Alignment:
Q  546 aaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggatttttgtaattg 608  Q
    |||||||||| |||||||||||  |||||||||||||| ||| |||| | |||||| ||||||    
T  22331563 aaatatttgagtatgttgtatgattgaaatgcaaatttatgagaatacgaatttttttaattg 22331501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 311 - 377
Target Start/End: Original strand, 46993486 - 46993552
Alignment:
Q  311 ttaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatct 377  Q
    |||||| |||||||||||||||||||||| ||||  ||| | |||||| |||||| |||| ||||||    
T  46993486 ttaagcccaaaattaaagtccaacataaaatactttttaatccattcaatttctctcatcttcatct 46993552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 39571718 - 39571678
Alignment:
Q  341 tactccttagttcattcactttctcccatcatcatctcatc 381  Q
    ||||||| | |||||||||||||||| ||||||||||||||    
T  39571718 tactcctgaattcattcactttctcctatcatcatctcatc 39571678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 4e-64; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 305 - 589
Target Start/End: Original strand, 37630560 - 37630848
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcactcaca--ctattttatttcta 402  Q
    |||| ||||||||||||||||||||||||||| || |||| |||| ||||||||||||||| ||||||| |||||||||||| |  ||||||| ||||||    
T  37630560 ttatgattaagctcaaaattaaagtccaacatcaaatacttcttaattcattcactttctctcatcatcgtctcatcactcaaagtctattttgtttcta 37630659  T
Q  403 ctaaaatagaacaccggctgctagtcacacctaacccgtc---gttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttata 499  Q
    |||||| |||||||  ||  | |||||||| |||||| ||   ||| ||| |||||| |   ||||||||| ||||||||||||||||||||||||||||    
T  37630660 ctaaaaaagaacactagccaccagtcacacataacccatcatcgttcctcatcgctgttgggatcgttcatctcttgttagttttttcatgttagttata 37630759  T
Q  500 caaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaa 589  Q
    |||||||||||| ||||| ||||| |||  ||||| |||||| ||||||||||||| ||| ||||||||||||||| |||||||||||||    
T  37630760 caaagtagtttg-aaaaacagagaacattgaaaacaaagttctatgaaatatttgagtattttgtatgcatgaaatacaaatttgtgaaa 37630848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 305 - 590
Target Start/End: Original strand, 5526448 - 5526744
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatc----------tcatcactcacact--at 392  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||  ||||||||||          ||||||||||| ||  ||    
T  5526448 ttatgattaaactcaaaattaaagtccaacataaaatactccttaattcattcactttctgtcatcatcatcacatctcatctcatcactcacgctctat 5526547  T
Q  393 tttatttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgtt 492  Q
    ||  |||| | ||||| |||||||  || || |||||   ||||||| ||||| |||  ||| ||||  ||||||||| |||||||||||||||||||||    
T  5526548 ttcgtttcaattaaaaaagaacactagccgccagtcatgtctaacccatcgttcctcaccgccgctaggatcgttcatatcttgttagttttttcatgtt 5526647  T
Q  493 agttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaa 590  Q
    |||||||||| |||||||| ||||| ||| ||||||| |||| |||||| ||||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  5526648 agttatacaatgtagtttggaaaaa-agatagcatgacaaacaaagttctatgaaatatttgagtatgttgtatgtatgaaatacaaatttgtgaaaa 5526744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 305 - 599
Target Start/End: Original strand, 10722027 - 10722329
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttc--attcactttctcccatcatcatctcatc-----actcac--actatttt 395  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| |||  ||||||||||||||||||||||||||||     ||||||   ||||||     
T  10722027 ttatgattaagctcaaaattaaagtccaacataaaatactccttaattcatattcactttctcccatcatcatctcatctcattactcacggtctatttc 10722126  T
Q  396 atttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagt 495  Q
     |||||||||||| |||||||  || ||  |||||||||||||  ||||| | | ||||  | |  ||| | ||| |||| |||||||||||||||||||    
T  10722127 gtttctactaaaaaagaacactagccgcaggtcacacctaacctatcgttccacttcgcctcaaggatcttccatatcttattagttttttcatgttagt 10722226  T
Q  496 tatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatgg 595  Q
    ||||||| ||||||||  |||| ||||| |||| ||||| || ||| || |||||||||| || |||||||||||||||| |||| || ||||||||| |    
T  10722227 tatacaatgtagtttg-taaaacagagaacatggaaaacaaaattctatcaaatatttgagtacgttgtatgcatgaaatacaaaattatgaaaatatag 10722325  T
Q  596 attt 599  Q
    ||||    
T  10722326 attt 10722329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 310 - 608
Target Start/End: Complemental strand, 33036986 - 33036687
Alignment:
Q  310 attaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcactcacact--attttatttctactaaa 407  Q
    |||||||||||||||||||  ||||||| | || ||| || ||||||  |||||||||||||||||||||||||| |||||  ||||| |||||||||||    
T  33036986 attaagctcaaaattaaaggacaacatataatattccataattcatttgctttctcccatcatcatctcatcacttacactttattttgtttctactaaa 33036887  T
Q  408 atagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaaagtag 507  Q
    | | |||||  || ||| |||||||||||||| || ||  ||  || ||||   ||||| ||| | |||||||||||||||||||||||||||||| |||    
T  33036886 aaataacactagccgctggtcacacctaacccatcattcttcaccgttgctgggatcgtccatcttttgttagttttttcatgttagttatacaaactag 33036787  T
Q  508 tttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggatttttgtaatt 607  Q
    ||||||||   | |||  ||| ||||| |||||  || |||||||||| ||||||||||| || |||| |||||||||||||||||| || ||| |||||    
T  33036786 tttgaaaagcaa-agaaaatggaaaacaaagttttataaaatatttgagtatgttgtatgtataaaatacaaatttgtgaaaatatgaatatttttaatt 33036688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 305 - 587
Target Start/End: Complemental strand, 30906794 - 30906505
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatc-----tcatcactcacact--attttat 397  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||| |||||||||||||  |||||||||||     ||||||||||||||  ||||  |    
T  30906794 ttatgattaagctcaaaattaaagttcaacataaaatactccttaattcattcactttcgtccatcatcatcccatttcatcactcacactctatttcgt 30906695  T
Q  398 ttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagtta 497  Q
    ||||||||||| ||||||   |  |||||| | |||||| |  || || |||  ||  | |   ||||| ||| |||||||||||||||||||||| |||    
T  30906694 ttctactaaaaaagaacattagacgctagtaaaacctaatctatcattcctcaccgtcgatgtgatcgtccatctcttgttagttttttcatgttaatta 30906595  T
Q  498 tacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatg-aaatgcaaatttgtga 587  Q
    ||||||||||||||| |||| ||||| |||| ||||| |||||| ||||||||||||| |||||||||| |||| |||| |||||||||||    
T  30906594 tacaaagtagtttga-aaaacagagaacatggaaaacaaagttctatgaaatatttgagtatgttgtatacatgaaaatacaaatttgtga 30906505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 312 - 608
Target Start/End: Complemental strand, 44018890 - 44018593
Alignment:
Q  312 taagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcactcacact--attttatttctactaaaat 409  Q
    |||| ||||||||||||||||||||||| || | |||| ||| ||| ||||||||||  ||||||||||||||||||||  ||||||||||| ||||||     
T  44018890 taagttcaaaattaaagtccaacataaaatatttcttaattcgttcgctttctcccaatatcatctcatcactcacactgtattttatttctgctaaaaa 44018791  T
Q  410 agaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaaagtagtt 509  Q
    |||||||  || |  || ||||| ||||   ||||| ||   ||| |||   ||||| ||| | ||||||||| || ||||||  |||||||||||||||    
T  44018790 agaacactagccgtcagccacacttaactaatcgttccttaccgcggctgggatcgtccatcttttgttagttcttccatgttgattatacaaagtagtt 44018691  T
Q  510 tgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggatttttgtaattg 608  Q
    ||||||   ||||| |||| ||||| |||||   |||||||||||| |||| |||||||||||||| |||||||||| ||||||| |||||| ||||||    
T  44018690 tgaaaacc-agagaacatggaaaacaaagttatgtgaaatatttgagtatgatgtatgcatgaaatacaaatttgtgtaaatatgaatttttttaattg 44018593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 305 - 601
Target Start/End: Complemental strand, 22848161 - 22847861
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatc-----actcacact--attttat 397  Q
    |||| |||||||||||| |||||| |||||||||| |||||| |  |||||||||||||||||||||||||||||||     |||||||||  ||||| |    
T  22848161 ttatgattaagctcaaagttaaaggccaacataaaatactccattattcattcactttctcccatcatcatctcatctcatcactcacactttattttgt 22848062  T
Q  398 ttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagtta 497  Q
    || |||| ||| |||||||  |   |||| |||||||||||| || || |||   |    ||  ||||| ||| |  |||||||||||||||||||||||    
T  22848061 ttatacttaaaaagaacacttgacactagccacacctaacccatcattcctcacagtcattaggatcgtccatcttatgttagttttttcatgttagtta 22847962  T
Q  498 tacaaagtagtttgaaaaaatagagagcatg-aaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatgga 596  Q
    |||||||||||||    |||  ||||  ||| |||||| |||||| ||||||||||||| |||||||||||||||||||  ||||||||||||||||| |    
T  22847961 tacaaagtagttt----aaagggagaatatggaaaaacaaagttctatgaaatatttgagtatgttgtatgcatgaaataaaaatttgtgaaaatatgaa 22847866  T
Q  597 ttttt 601  Q
    |||||    
T  22847865 ttttt 22847861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 305 - 594
Target Start/End: Complemental strand, 3690057 - 3689772
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcac-tcacactattttatttc--- 400  Q
    |||| ||||||||||||||||||||||||| |||| ||||||||    ||||||||||||| ||||||||||||||| | |||| | |  |||||||       
T  3690057 ttatgattaagctcaaaattaaagtccaacgtaaaatactcctt----cattcactttctctcatcatcatctcatctcatcactcaaagttatttcgtt 3689962  T
Q  401 --tactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttat 498  Q
      |||||||| |||||||  ||     |||||||||||| | ||||| ||| |||||| |   ||| | ||| |||||||||||||||||||||||||||    
T  3689961 tatactaaaaaagaacacttgccatccgtcacacctaacacatcgttcctcatcgctgatgggatcatccatctcttgttagttttttcatgttagttat 3689862  T
Q  499 acaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatg 594  Q
    | |||||||||||| |||| | ||| |||||||||| |||||| |||||||||||||      |||||||| ||||| ||||||||||||||||||    
T  3689861 ataaagtagtttga-aaaacatagaacatgaaaaacaaagttctatgaaatatttga-----gtgtatgcacgaaatacaaatttgtgaaaatatg 3689772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 305 - 390
Target Start/End: Complemental strand, 29109116 - 29109031
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcactcacact 390  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||    
T  29109116 ttataattaagctcaaaattaaagtccaacataaaatactccttaattcattcactttctcctatcatcatctcatcagtcacact 29109031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 472 - 608
Target Start/End: Complemental strand, 3919649 - 3919514
Alignment:
Q  472 tcttgttagttttttcatgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatg 571  Q
    |||||||||||||||||||||||||| |||||||||||||| |||| || || |||  ||||| || |||||| |||||||||| |||||||||| |||     
T  3919649 tcttgttagttttttcatgttagttacacaaagtagtttga-aaaacagtgaacatagaaaacaaatttccataaaatatttgagtatgttgtatacata 3919551  T
Q  572 aaatgcaaatttgtgaaaatatggatttttgtaattg 608  Q
    || | |||||||||||||||||| |||||| ||||||    
T  3919550 aactacaaatttgtgaaaatatgaatttttttaattg 3919514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 462 - 594
Target Start/End: Original strand, 4241084 - 4241215
Alignment:
Q  462 atcgttcatttcttgttagttttttcatgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgt 561  Q
    |||| |||| || ||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||| ||||| |||||| |||||||||| || |||||    
T  4241084 atcggtcatctcatgttagttttttcatgttaattatacaaagtagtttg-aaaaagagagaacatggaaaacaaagttctatgaaatattcgagtatgt 4241182  T
Q  562 tgtatgcatgaaatgcaaatttgtgaaaatatg 594  Q
    ||||  |||||||| ||||||| ||||||||||    
T  4241183 tgtagacatgaaatacaaatttttgaaaatatg 4241215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 478 - 601
Target Start/End: Complemental strand, 29108999 - 29108876
Alignment:
Q  478 tagttttttcatgttagttatacaaagtagtttgaaaaaatagagagcat-gaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatg 576  Q
    |||||||||||||||||||||| ||||||  |||||||| |||||| ||  ||||||| ||||| ||| |||||||| | |||||||||||||||||||     
T  29108999 tagttttttcatgttagttatataaagtaacttgaaaaa-tagagaacaaagaaaaacaaagtttcatcaaatatttaagtatgttgtatgcatgaaata 29108901  T
Q  577 caaatttgtgaaaatatggattttt 601  Q
    |||||||||||||||||| ||||||    
T  29108900 caaatttgtgaaaatatgaattttt 29108876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 28199824 - 28199881
Alignment:
Q  319 aaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatc 376  Q
    ||||||||||||||||||| | ||||||||| | ||||||||||||||||||||||||    
T  28199824 aaaattaaagtccaacatataatactccttaatccattcactttctcccatcatcatc 28199881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 381
Target Start/End: Original strand, 30340615 - 30340677
Alignment:
Q  319 aaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatc 381  Q
    ||||||||||| ||||||||| ||||| ||  ||||||||||||||||||| |||||| ||||    
T  30340615 aaaattaaagttcaacataaaatactcttttattcattcactttctcccattatcatcacatc 30340677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 27866840 - 27866889
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttca 354  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||| ||||    
T  27866840 ttatgattaatctcaaaattaaagtccaacataaaatactccttaattca 27866889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 568 - 608
Target Start/End: Original strand, 38607567 - 38607607
Alignment:
Q  568 catgaaatgcaaatttgtgaaaatatggatttttgtaattg 608  Q
    |||||||||||||||||||| |||||| |||||| ||||||    
T  38607567 catgaaatgcaaatttgtgagaatatgaatttttttaattg 38607607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 1e-61; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 305 - 608
Target Start/End: Original strand, 11846472 - 11846779
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcac-----tcaca--ctattttat 397  Q
    |||| |||||||||||||||||||||||||||| | ||||||||| ||||| |||||||| |||||||||||||||| |     ||||   ||||||  |    
T  11846472 ttatgattaagctcaaaattaaagtccaacatacaatactccttaattcatccactttcttccatcatcatctcatctcatcgctcacggtctatttcgt 11846571  T
Q  398 ttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagtta 497  Q
    |||||||||||  ||||||  || |  ||||||||||||||| ||||||||| |||| ||||| |||   ||| ||  ||||||||||||||||||||||    
T  11846572 ttctactaaaaaggaacactagccgtcagtcacacctaacccatcgttgctcatcgccgctaagatcacccatctc--gttagttttttcatgttagtta 11846669  T
Q  498 tacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggat 597  Q
    |||||| ||||||||||||  ||||| |||||||||| |||||| |||||||||||||  |||||||||||||||||| |||||||||||||||||| ||    
T  11846670 tacaaaatagtttgaaaaac-agagaacatgaaaaacaaagttctatgaaatatttgagcatgttgtatgcatgaaatacaaatttgtgaaaatatgaat 11846768  T
Q  598 ttttgtaattg 608  Q
    |||| ||||||    
T  11846769 ttttttaattg 11846779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 305 - 601
Target Start/End: Complemental strand, 7176441 - 7176145
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcactcacact--attttatttcta 402  Q
    |||| ||||||||||||| |||||||||||||||| || |||||| |||||| | |||||| ||| |||||||||||||||||| |  ||||  ||||||    
T  7176441 ttatgattaagctcaaaactaaagtccaacataaaatattccttaattcatttattttctctcataatcatctcatcactcacagtccatttcgtttcta 7176342  T
Q  403 ctaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaa 502  Q
     | ||| |||||||  ||||  |||||||||||||||   | | ||| || | | |  ||||||||||  ||||||||||||||||||||||||||| ||    
T  7176341 tttaaa-agaacactagctgtcagtcacacctaacccactgctcctcatcaccgttggaatcgttcatcacttgttagttttttcatgttagttataaaa 7176243  T
Q  503 agtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
    ||||||||||||||  ||||  |||| ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  7176242 agtagtttgaaaaac-agagtacatggaaaacaaagttctatgaaatatttgagtatgttgtatgcatgaaatgcaaatttgtgaaaatatgaattttt 7176145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 305 - 593
Target Start/End: Original strand, 11971642 - 11971935
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcac-----tcaca--ctattttat 397  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||| ||||| |||||||| |||||||||||||||| |     ||||   |||| | ||    
T  11971642 ttatgattaatctcaaaattaaagtccaacataaaatactccttaattcatccactttcttccatcatcatctcatctcatccctcacggtctatatcat 11971741  T
Q  398 ttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagtta 497  Q
    ||||||||||| |||||||  || |   |||||| ||||| | | |||| |  ||||  || | ||||  ||| ||||||||||||||||||||||||||    
T  11971742 ttctactaaaaaagaacactagccgtcggtcacatctaactcattgttgtta-tcgcctctgagatcgcccatctcttgttagttttttcatgttagtta 11971840  T
Q  498 tacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatat 593  Q
    |||||||||||||||||||  ||||| |||||||||| |||||| |||||||||||||  |||||||||||||||||| |||||||||||||||||    
T  11971841 tacaaagtagtttgaaaaac-agagaacatgaaaaacaaagttctatgaaatatttgagcatgttgtatgcatgaaatacaaatttgtgaaaatat 11971935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 305 - 593
Target Start/End: Original strand, 23300649 - 23300941
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatc-----actcaca--ctattttat 397  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||| ||| |||||||| ||||||||||||||||||     |||||||  ||||||  |    
T  23300649 ttatgattaaactcaaaattaaagtccaacataaaatactccttaattctttcactttttcccatcatcatctcatctcatcactcacattctatttcgt 23300748  T
Q  398 ttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagtta 497  Q
    ||| |||| || |||||||  |  |||| ||||||||||||| ||  | ||| |||   ||   ||||| ||| ||||||||||||| ||||||||||||    
T  23300749 ttccactataaaagaacactagtcgctactcacacctaacccatc--tcctcatcgtcactgggatcgtccatctcttgttagttttatcatgttagtta 23300846  T
Q  498 tacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatat 593  Q
    |||||||||||||| || |||||||| |||||||||| | |||| || |||||||||| |||||||| ||  |||||| ||||||| |||||||||    
T  23300847 tacaaagtagtttg-aacaatagagaacatgaaaaacaaggttctattaaatatttgagtatgttgtttgtttgaaatacaaatttatgaaaatat 23300941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 336 - 608
Target Start/End: Complemental strand, 26186629 - 26186350
Alignment:
Q  336 taaattactccttagttcattcactttctcccatcatcatct-----catcactcacact--attttatttctactaaaatagaacaccggctgctagtc 428  Q
    |||| ||||| ||| ||||||||||||||| |||||||||||     |||||||||||||  ||||| |||||||||||| |||||||  |||||  | |    
T  26186629 taaaatactctttaattcattcactttctctcatcatcatctaatctcatcactcacactctattttgtttctactaaaaaagaacactagctgcatgcc 26186530  T
Q  429 ac-acctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaaagtagtttgaaaaaatagagagcat 527  Q
    || ||||||||| | ||| ||| |||| | |   ||| | ||| |||||||||||||||||||||| |||||||||||||||||| |||| ||| | ||     
T  26186529 accacctaacccattgttcctcatcgccgttgggatcatccatctcttgttagttttttcatgttatttatacaaagtagtttga-aaaacagataacac 26186431  T
Q  528 gaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggatttttgtaattg 608  Q
    | ||||| |||||  ||||||||||||| |||||||||||| |||||| ||||||| | |||||||||| |||| ||||||    
T  26186430 gtaaaacaaagttatatgaaatatttgagtatgttgtatgcttgaaatacaaatttttaaaaatatggagttttttaattg 26186350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 472 - 594
Target Start/End: Original strand, 9827144 - 9827265
Alignment:
Q  472 tcttgttagttttttcatgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatg 571  Q
    ||||||||||||||||| ||||||||||||||||| | ||||||| | |||| |||| ||||| |||||| ||||||||||||| |||||||||||||||    
T  9827144 tcttgttagttttttcaggttagttatacaaagtattatgaaaaa-tggagaacatggaaaacaaagttctatgaaatatttgagtatgttgtatgcatg 9827242  T
Q  572 aaatgcaaatttgtgaaaatatg 594  Q
    |||| ||||||||||||||||||    
T  9827243 aaatacaaatttgtgaaaatatg 9827265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 482 - 594
Target Start/End: Original strand, 5416438 - 5416549
Alignment:
Q  482 tttttcatgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaat 581  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||| ||||| |||||  |||||||||| || ||||||||||||||||||| |||||    
T  5416438 tttttcatgttagttatacaaagtcgtttgaaaaac-agagagcatggaaaacaaagttatatgaaatattagagtatgttgtatgcatgaaatacaaat 5416536  T
Q  582 ttgtgaaaatatg 594  Q
    || ||||||||||    
T  5416537 ttatgaaaatatg 5416549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 474 - 601
Target Start/End: Complemental strand, 32613681 - 32613555
Alignment:
Q  474 ttgttagttttttcatgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaa 573  Q
    |||||||||||||||||||| ||||| |||||||||||||||| |||||| |||| ||||| ||| |  |||||||| |||| ||||||||||| |||||    
T  32613681 ttgttagttttttcatgttaattatataaagtagtttgaaaaa-tagagaacatggaaaacaaagatgtatgaaatagttgagtatgttgtatgaatgaa 32613583  T
Q  574 atgcaaatttgtgaaaatatggattttt 601  Q
    || ||||||||| ||||||| |||||||    
T  32613582 atacaaatttgtaaaaatatagattttt 32613555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 305 - 381
Target Start/End: Original strand, 9826969 - 9827045
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatc 381  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  9826969 ttatgattaagctcaatattaaagtccaacataaaatactccttaattcattcactttctcccatcatcatctcatc 9827045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 2454056 - 2453993
Alignment:
Q  312 taagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcat 375  Q
    ||||||||| |||||||||||||||||| || | |||| |||||||||||||||||||||||||    
T  2454056 taagctcaagattaaagtccaacataaaatatttcttaattcattcactttctcccatcatcat 2453993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 413
Target Start/End: Complemental strand, 7551304 - 7551242
Alignment:
Q  353 cattcactttctcccatcatcatctcatcactc--acactattttatttctactaaaatagaa 413  Q
    ||||||||||||||| |||||||||||||||||  || ||||||||||||| |||||||||||    
T  7551304 cattcactttctcccgtcatcatctcatcactcatactctattttatttcttctaaaatagaa 7551242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 1208790 - 1208864
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctca 379  Q
    ||||||||| || |||||||||||| || |||||| |||| |||| ||||||||||||| | |||||||||||||    
T  1208790 ttatcattaggcccaaaattaaagttcagcataaaatactacttaattcattcactttccctcatcatcatctca 1208864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 20722519 - 20722575
Alignment:
Q  318 caaaattaaagtccaacataaattactccttagttcattcactttctcccatcatca 374  Q
    ||||||||||| ||||||||||||||| |||| | |||||||||||| |||||||||    
T  20722519 caaaattaaagcccaacataaattacttcttaatgcattcactttctgccatcatca 20722575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 526 - 601
Target Start/End: Complemental strand, 2108568 - 2108493
Alignment:
Q  526 atgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
    |||||| || |||||||||||||||||| | || |  ||||||||||||| ||||||||||| |||||| ||||||    
T  2108568 atgaaatacaaagttccatgaaatattttagtacgacgtatgcatgaaatacaaatttgtgataatatgaattttt 2108493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 26880016 - 26880074
Alignment:
Q  318 caaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatc 376  Q
    |||||||||||  ||||||||| ||||| ||| | ||||||||||||||||||||||||    
T  26880016 caaaattaaagctcaacataaaatactcattaatccattcactttctcccatcatcatc 26880074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 593
Target Start/End: Complemental strand, 2453837 - 2453787
Alignment:
Q  543 atgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatat 593  Q
    ||||||||||| | ||||||||||||||||||  ||||| |||||||||||    
T  2453837 atgaaatatttaagtatgttgtatgcatgaaacacaaatatgtgaaaatat 2453787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 5416283 - 5416333
Alignment:
Q  331 caacataaattactccttagttcattcactttctcccatcatcatctcatc 381  Q
    ||||||||| || || ||| ||||||||||||||| |||||||||||||||    
T  5416283 caacataaaatagtctttaattcattcactttctctcatcatcatctcatc 5416333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 601
Target Start/End: Complemental strand, 7551093 - 7551049
Alignment:
Q  557 tatgttgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
    |||||||||||||| |||| ||||||||| |||||||| ||||||    
T  7551093 tatgttgtatgcattaaatacaaatttgtaaaaatatgaattttt 7551049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 489 - 533
Target Start/End: Original strand, 12263387 - 12263431
Alignment:
Q  489 tgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaa 533  Q
    |||| |||||| ||||| ||||||||||||||||| |||||||||    
T  12263387 tgttggttataaaaagttgtttgaaaaaatagagaacatgaaaaa 12263431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 601
Target Start/End: Original strand, 20722885 - 20722929
Alignment:
Q  557 tatgttgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
    ||||||||||||||||||| ||| ||||||| |||||| ||||||    
T  20722885 tatgttgtatgcatgaaatacaagtttgtgacaatatgaattttt 20722929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 23586095 - 23586143
Alignment:
Q  313 aagctcaaaattaaagtccaacataaattactccttagttcattcactt 361  Q
    ||||| |||||||||||||||| |||| ||||||||  |||||||||||    
T  23586095 aagctaaaaattaaagtccaacgtaaaatactccttcattcattcactt 23586143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 533
Target Start/End: Original strand, 26880192 - 26880224
Alignment:
Q  501 aaagtagtttgaaaaaatagagagcatgaaaaa 533  Q
    ||||| |||||||||||||||||||||||||||    
T  26880192 aaagttgtttgaaaaaatagagagcatgaaaaa 26880224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 4e-61; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 310 - 601
Target Start/End: Complemental strand, 19682018 - 19681721
Alignment:
Q  310 attaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatc-----act--cacactattttatttcta 402  Q
    ||||||||||||||||||||| |||||||| ||||||||| || ||||||  ||||||||||||||||||||     |||  ||||||||||  ||||||    
T  19682018 attaagctcaaaattaaagtcaaacataaaatactccttaatttattcacggtctcccatcatcatctcatctaatcacttacacactatttcgtttcta 19681919  T
Q  403 ctaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaa 502  Q
    |||||| |||||||  || |  |||| |||||||||| ||||| |||||| | ||| | || || ||| |||| ||||||||||||||||||||||||||    
T  19681918 ctaaaaaagaacactagccgtcagtctcacctaacccatcgttcctcgtcaccgctgagattgtccatctctttttagttttttcatgttagttatacaa 19681819  T
Q  503 agtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
    |||||||||||||| |||||| |||| ||| | |||||  ||||||||||||| || ||||||||| |||||| |||||||||||||||||||||||||    
T  19681818 agtagtttgaaaaa-tagagaacatggaaaccaaagttttatgaaatatttgagtacgttgtatgcgtgaaatacaaatttgtgaaaatatggattttt 19681721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 305 - 608
Target Start/End: Original strand, 42141472 - 42141774
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatc-----actcacactattttattt 399  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||| |  |||||||||||| |||||||||||||||     |||||| ||||||  |||    
T  42141472 ttatgattaatctcaaaattaaagtccaacataaaatactccttaatg-attcactttctctcatcatcatctcatctcattactcactctatttctttt 42141570  T
Q  400 ctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttata 499  Q
    ||||||||| |||| ||  ||  || |||||||||||||| ||||| ||| |||  | |   ||||| ||| ||  ||||||||||||||||||||||||    
T  42141571 ctactaaaaaagaatactagccactggtcacacctaacccatcgttcctcatcgtcgttgggatcgtccatgtc--gttagttttttcatgttagttata 42141668  T
Q  500 caaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggattt 599  Q
    |||||||||||| ||||| ||| | |||| ||||| |||||| ||||||||||| |   ||||||||||||||||| |||||||||||||||||| ||||    
T  42141669 caaagtagtttg-aaaaacagataacatgtaaaacaaagttctatgaaatatttca--gtgttgtatgcatgaaatacaaatttgtgaaaatatgaattt 42141765  T
Q  600 ttgtaattg 608  Q
    || ||||||    
T  42141766 ttttaattg 42141774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 310 - 592
Target Start/End: Complemental strand, 53393104 - 53392806
Alignment:
Q  310 attaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatc--------------atcatctcatcactcacact--att 393  Q
    |||||||||||||||||||  ||||||||| | |||| || ||||||||||||||||||||              ||||||||||||||||||||  |||    
T  53393104 attaagctcaaaattaaaggtcaacataaaatgctccataattcattcactttctcccatcgtcatcatcatctcatcatctcatcactcacactctatt 53393005  T
Q  394 ttatttctactaaaata-gaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgtt 492  Q
    || |||||| ||||| | ||||   | | |||||||||||||||||  ||||| |||| ||| |||   ||||| ||| |||||||| ||||||||||||    
T  53393004 ttgtttctattaaaaaaagaacgttgaccgctagtcacacctaacctatcgttcctcggcgccgcttggatcgtccatctcttgttaattttttcatgtt 53392905  T
Q  493 agttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaata 592  Q
    ||| |||||||||| |||||||||  ||||| |||| ||||  |||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  53392904 agtaatacaaagtattttgaaaaac-agagaacatggaaaataaagttctatgaaatatttgaatatgttgtatgcatgaaatacaaatttgtgagaata 53392806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 472 - 608
Target Start/End: Complemental strand, 9140796 - 9140661
Alignment:
Q  472 tcttgttagttttttcatgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatg 571  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| |||| | |||  ||||  |||||| ||||||||||||| |||||||||||| ||    
T  9140796 tcttgttagtttttttatgttagttacacaaagtagtttgaaaaa-tagataacatagaaaataaagttctatgaaatatttgagtatgttgtatgcttg 9140698  T
Q  572 aaatgcaaatttgtgaaaatatggatttttgtaattg 608  Q
    |||| ||||||| ||||||||| ||||||| ||||||    
T  9140697 aaatacaaatttttgaaaatatagatttttttaattg 9140661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 305 - 592
Target Start/End: Complemental strand, 13207344 - 13207050
Alignment:
Q  305 ttatcattaagctcaaaa-ttaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatc-----actcacact--atttta 396  Q
    |||| ||||||||||||| |||||| |||||||||| ||||| ||| | |||||||||||| | ||||||||||||||     ||||| |||  |||| |    
T  13207344 ttatgattaagctcaaaaattaaagcccaacataaaatactcattaatccattcactttcttctatcatcatctcatctcatcactcagactctatttca 13207245  T
Q  397 tttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttctt-gttagttttttcatgttagt 495  Q
    |||||| ||||| | |||||  ||  | |  |||||||| ||| ||||   ||  |||||||   ||||| ||| |||| |||||||||| |||||||||    
T  13207244 tttctattaaaaaacaacacaagccaccaaccacacctagcccatcgtatttcaccgctgctgtgatcgtccatctctttgttagttttt-catgttagt 13207146  T
Q  496 tatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaata 592  Q
    |||||||||| |||||||||| ||| || | || ||||| ||| |||||||||||||| | ||||||||||||||||||| ||||| ||||||||||    
T  13207145 tatacaaagttgtttgaaaaa-tagggaacgtggaaaacaaagctccatgaaatatttaagtatgttgtatgcatgaaatacaaatatgtgaaaata 13207050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 305 - 381
Target Start/End: Complemental strand, 8606088 - 8606012
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatc 381  Q
    |||| |||| || |||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||| |||||    
T  8606088 ttattattaggcccaaaattaaagtccaacataaaatactccttaattcattcactttctcctatcatcatttcatc 8606012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 462 - 601
Target Start/End: Original strand, 3041995 - 3042126
Alignment:
Q  462 atcgttcatttcttg-ttagttttttcatgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatg 560  Q
    ||||||||| ||||| |||||||| ||||||| |||||||||||| ||||||| ||         ||||||||| || ||||||||||||||||| ||||    
T  3041995 atcgttcatctcttggttagttttctcatgtttgttatacaaagttgtttgaagaat--------atgaaaaacaaatttccatgaaatatttgagtatg 3042086  T
Q  561 ttgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
    ||||||  | ||||| ||||||||| ||||||| |||||||    
T  3042087 ttgtatata-gaaatacaaatttgtaaaaatatagattttt 3042126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 377
Target Start/End: Complemental strand, 23107851 - 23107789
Alignment:
Q  315 gctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatct 377  Q
    ||||||||||||||||||||||||| ||||  ||| | |||||||||||||  ||||||||||    
T  23107851 gctcaaaattaaagtccaacataaaatactttttaatccattcactttctctaatcatcatct 23107789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 543 - 608
Target Start/End: Complemental strand, 39838942 - 39838877
Alignment:
Q  543 atgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggatttttgtaattg 608  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||| |  |||||| ||||||    
T  39838942 atgaaatatttgattatgttgtatatatgaaatacaaatttgtgaaaatttaaatttttttaattg 39838877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 24466259 - 24466204
Alignment:
Q  315 gctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatc 370  Q
    ||||||||||||||||||||||||| ||||  ||| | ||||||||||||| ||||    
T  24466259 gctcaaaattaaagtccaacataaaatactttttaatccattcactttctctcatc 24466204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 2e-57; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 305 - 594
Target Start/End: Original strand, 44471249 - 44471543
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcac-----tcacact--attttat 397  Q
    |||| ||||||||||||||||||| | |||||||| |||||| || ||||||||||||||||||| |||||||||||||     |||||||  ||||  |    
T  44471249 ttatgattaagctcaaaattaaaggctaacataaaatactccataattcattcactttctcccattatcatctcatcacatcactcacactctatttcgt 44471348  T
Q  398 ttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagtta 497  Q
    | ||||||||| | |||||  || ||||||||| |||||||| ||||| |||   || |||   ||||| ||| ||||||||||||||||||||||||||    
T  44471349 tactactaaaa-ataacactagccgctagtcacccctaacccatcgttcctcagagccgctgggatcgtccatctcttgttagttttttcatgttagtta 44471447  T
Q  498 tacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatg 594  Q
    |||||||||||||||||||  ||||| |||| ||||| |||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||||    
T  44471448 tacaaagtagtttgaaaaac-agagaacatggaaaacaaagttctatgaaatatttgagtatgtcgtatgcatgaaatacaaatttgtgaaaatatg 44471543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 316 - 608
Target Start/End: Original strand, 46892829 - 46893116
Alignment:
Q  316 ctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcactcaca--ctattttatttctactaaaatagaa 413  Q
    |||||||||||||| ||||||||| ||||||||| |||||||||||||||      |||||||| ||||||||  ||||||  |||||||||||| ||||    
T  46892829 ctcaaaattaaagttcaacataaaatactccttaattcattcactttctc------tcatctcaccactcacaatctatttcgtttctactaaaaaagaa 46892922  T
Q  414 caccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaaagtagtttgaa 513  Q
    |||   |||  ||||||||||||| | |||||  || | |  | |   ||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  46892923 cactatctgtcagtcacacctaactcatcgttcttcattgtcgttgggatcgtccatctcttgttagttttttcatgttagttatacaaagtagtttgaa 46893022  T
Q  514 aaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggatttttgtaattg 608  Q
    |||  ||||| |||| ||||| |||||| ||||||||||||| ||||||||||||||||||  |||||||||||||||||| |||| | ||||||    
T  46893023 aaac-agagaacatggaaaacaaagttctatgaaatatttgagtatgttgtatgcatgaaaaacaaatttgtgaaaatatgaatttatttaattg 46893116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 305 - 601
Target Start/End: Complemental strand, 779451 - 779151
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatc-----actcacactattttattt 399  Q
    |||| ||||| ||||||||||||| |||||||||| |||| | || |||| ||||||||| ||||||||||||||||     |||||| ||||||  |||    
T  779451 ttatgattaaactcaaaattaaaggccaacataaaatacttcataattcactcactttcttccatcatcatctcatctcatcactcactctatttcgttt 779352  T
Q  400 ctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttata 499  Q
    ||| || || |||||||  || |||||||||||||||||| ||||| |||  ||| |||   || || ||| ||||||| |  |||||||||||||||||    
T  779351 ctaatagaaaagaacactagccgctagtcacacctaacccatcgttcctcaccgccgctgggattgtccatctcttgtt-gaattttcatgttagttata 779253  T
Q  500 caaagt-agtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggatt 598  Q
    |||| | ||||||||||| |||||| |||||||||| |||||| ||||||||||||| ||||||||||||||| ||| |||||||||||||||||| |||    
T  779252 caaaattagtttgaaaaa-tagagaacatgaaaaacaaagttctatgaaatatttgagtatgttgtatgcatgcaatacaaatttgtgaaaatatgaatt 779154  T
Q  599 ttt 601  Q
    |||    
T  779153 ttt 779151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 305 - 594
Target Start/End: Complemental strand, 44681952 - 44681655
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatc--------tcatcactcaca--ctattt 394  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||        |||||||||| |  ||||||    
T  44681952 ttatgattaagctcaaaattaaagtccaacataaaatactccttaattcatttactttctcccatcatcatcatctcatctcatcactcataatctattt 44681853  T
Q  395 tatttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttag 494  Q
      ||| |||||||| ||||| |   | || ||||||||||||||  ||||| ||| |||  | |   ||| | ||| ||||||||||||||  |||||||    
T  44681852 cgtttatactaaaaaagaacgctatccgccagtcacacctaaccaatcgttcctcatcgtcgttgggatcatccatctcttgttagtttttg-atgttag 44681754  T
Q  495 ttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatg 594  Q
    ||||| ||||||||||||||||  ||||| |||| ||||| |||||| |||||||| |||| ||||||||||||||||||| ||||||||||||||||||    
T  44681753 ttatagaaagtagtttgaaaaac-agagaacatggaaaacaaagttctatgaaatacttgagtatgttgtatgcatgaaatacaaatttgtgaaaatatg 44681655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 305 - 593
Target Start/End: Complemental strand, 33231464 - 33231170
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcac-----tcacact--attttat 397  Q
    |||| |||||||||||||||||||  || |||||| ||||||  | ||||||||||||||| ||||||||||||||| |     |||||||  ||||  |    
T  33231464 ttatgattaagctcaaaattaaaggtcagcataaaatactccacaattcattcactttctcacatcatcatctcatctcatcgctcacactctatttcgt 33231365  T
Q  398 ttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagtta 497  Q
    ||||  ||||| |||| ||  || |||||||||||||||||| | ||| |||  | | |||   ||||| ||| ||||||||||||||| ||||||||||    
T  33231364 ttctggtaaaaaagaatactagccgctagtcacacctaacccattgttcctcaccaccgctgggatcgtccatctcttgttagtttttttatgttagtta 33231265  T
Q  498 tacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatat 593  Q
    ||||||||| |||||||||  ||||| |||  ||||  |||||| ||||||||||||| ||||||||||||||||||| ||||||| |||||||||    
T  33231264 tacaaagtaatttgaaaaac-agagaacatagaaaataaagttctatgaaatatttgagtatgttgtatgcatgaaatacaaatttctgaaaatat 33231170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 305 - 608
Target Start/End: Original strand, 23659618 - 23659929
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatct-----catcactcaca--ctattttat 397  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||||     |||||||| ||  ||||||  |    
T  23659618 ttataattaagctcaaaattaaagtccaacataaaatactccttaattcattcactttctactatcatcatcttatctcatcactcgcagtctatttcgt 23659717  T
Q  398 ttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagtta 497  Q
    |||||||||    |||| |  ||||| ||||||||||||| | |||||  || | ||||||   || || ||| |||||||||||||||||| |||||||    
T  23659718 ttctactaa----gaactctagctgc-agtcacacctaactcatcgttcttcattgctgctgggattgtccatctcttgttagttttttcatattagtta 23659812  T
Q  498 tacaaagtagtttgaaaaaatagagagcatgaaaaacgaa--gttccatgaaatatttgaatatgttgtatgcatgaaatgca-----aatttgtgaaaa 590  Q
    |||||||||||||||||||  ||||| | || ||||| ||  |||| ||||||||||||| ||||||||  ||||||||| ||     ||||||||||||    
T  23659813 tacaaagtagtttgaaaaac-agagaacgtggaaaacaaaaagttctatgaaatatttgagtatgttgtgcgcatgaaatacaaatttaatttgtgaaaa 23659911  T
Q  591 tatggatttttgtaattg 608  Q
    ||||||||||| ||||||    
T  23659912 tatggatttttttaattg 23659929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 472 - 607
Target Start/End: Original strand, 28550915 - 28551049
Alignment:
Q  472 tcttgttagttttttcatgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatg 571  Q
    |||||||||||||||||||||||||||| ||||||||||||| || ||||||  ||| ||||  |||||| ||||||||||| | ||||||||||| |||    
T  28550915 tcttgttagttttttcatgttagttatataaagtagtttgaagaa-tagagaatatggaaaataaagttctatgaaatatttaagtatgttgtatgaatg 28551013  T
Q  572 aaatgcaaatttgtgaaaatatggatttttgtaatt 607  Q
    ||||  |||||| ||||||||||||||||| |||||    
T  28551014 aaatataaatttatgaaaatatggatttttttaatt 28551049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 305 - 381
Target Start/End: Original strand, 26757827 - 26757903
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatc 381  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||| |||||||||||||||    
T  26757827 ttatgattaagctcaaaattaaagttcaacataaaatactccttaattcattcactttctctcatcatcatctcatc 26757903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 489 - 601
Target Start/End: Original strand, 44285952 - 44286063
Alignment:
Q  489 tgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaa 588  Q
    ||||||||||||||||||||||||||||  ||| | |||  ||||| |||||| || |||||||||| |||||||||||||| |||| ||||||||| ||    
T  44285952 tgttagttatacaaagtagtttgaaaaac-agaaaacatagaaaacaaagttctataaaatatttgagtatgttgtatgcataaaatacaaatttgtaaa 44286050  T
Q  589 aatatggattttt 601  Q
    |||||| ||||||    
T  44286051 aatatgaattttt 44286063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 305 - 381
Target Start/End: Original strand, 28550675 - 28550751
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatc 381  Q
    |||| ||||| ||||||||||||||||||| |||| |||| || | |||||||||||||||||||||||||||||||    
T  28550675 ttatgattaaactcaaaattaaagtccaacgtaaaatacttctcaattcattcactttctcccatcatcatctcatc 28550751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 482 - 608
Target Start/End: Complemental strand, 47831046 - 47830921
Alignment:
Q  482 tttttcatgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaat 581  Q
    |||||| |||||||||| |||||| |||| |||||| | |||  ||| |||||  |||||| || ||||||||  |||||| ||||||||||||||| ||    
T  47831046 tttttcgtgttagttatgcaaagttgttt-aaaaaacatagaagatggaaaacagagttccttggaatatttgtgtatgttttatgcatgaaatgcagat 47830948  T
Q  582 ttgtgaaaatatggatttttgtaattg 608  Q
    || ||||||||||||||||| ||||||    
T  47830947 ttttgaaaatatggatttttttaattg 47830921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 311 - 561
Target Start/End: Original strand, 54246671 - 54246932
Alignment:
Q  311 ttaagctcaaaattaaagtccaacataaattactccttagtt---cattcactttctcccatca-----tcatctcatcactcacac--tattttatttc 400  Q
    ||||||||||||||||||||||||||||| ||||||||| |    ||||||||||||| | |||     ||||||||||| ||||||  |||||  ||||    
T  54246671 ttaagctcaaaattaaagtccaacataaaatactccttattaatacattcactttctctcgtcatcatctcatctcatcagtcacactatatttcgtttc 54246770  T
Q  401 tactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttag--ttttttcatgttagttat 498  Q
    |||| ||| ||||||    |||| ||||||| ||||||| | ||| |||  ||| | |   ||| | ||| ||||||| |  |||||||||||||||||     
T  54246771 tactgaaaaagaacattatctgcaagtcacatctaacccattgttcctcaccgccgttgggatcatccatctcttgttggttttttttcatgttagttac 54246870  T
Q  499 acaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgt 561  Q
    ||||||||||||| ||||||| ||| ||   ||||| |||||| ||||||||||||| |||||    
T  54246871 acaaagtagtttg-aaaaataaagaacactgaaaacaaagttcaatgaaatatttgagtatgt 54246932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 543 - 608
Target Start/End: Complemental strand, 30553821 - 30553756
Alignment:
Q  543 atgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggatttttgtaattg 608  Q
    |||||||| ||||  |||||||||||||||||| ||||||||||||||||| ||||||| ||||||    
T  30553821 atgaaatacttgagcatgttgtatgcatgaaatacaaatttgtgaaaatatagatttttttaattg 30553756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 472 - 539
Target Start/End: Complemental strand, 30554325 - 30554259
Alignment:
Q  472 tcttgttagttttttcatgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagt 539  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| ||||| |||| ||||| ||||    
T  30554325 tcttgttagttttttcatgttagttatataaagtagttt-aaaaaacagagaacatggaaaacaaagt 30554259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 445
Target Start/End: Original strand, 44285795 - 44285922
Alignment:
Q  325 aaagtccaacataaattactccttagttcattcactttctcccatcatc-----atctcatcactcacact--attttatttctactaaaatagaacacc 417  Q
    |||| |||||||||| |||||| || |||||||||||||||||||||||     ||||||||| |||||||  ||||  |||||||||||| ||||||      
T  44285795 aaaggccaacataaaatactccataattcattcactttctcccatcatcgtctcatctcatcattcacactctatttcgtttctactaaaaaagaacatt 44285894  T
Q  418 ggctgctagtcacacctaacccgtcgtt 445  Q
     || |||| | ||||||||||| |||||    
T  44285895 agccgctacttacacctaacccatcgtt 44285922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 527 - 601
Target Start/End: Complemental strand, 26918207 - 26918133
Alignment:
Q  527 tgaaaaacgaagttccatgaaatattt-gaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
    |||||||| || ||| ||||||||||| ||||||||||||| ||| |||| ||||||||||||| |||||||||||    
T  26918207 tgaaaaacaaaattcgatgaaatattttgaatatgttgtatacat-aaatacaaatttgtgaaactatggattttt 26918133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 516
Target Start/End: Complemental strand, 26918241 - 26918201
Alignment:
Q  476 gttagttttttcatgttagttatacaaagtagtttgaaaaa 516  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  26918241 gttagttttctcatgttagttatacaaagttgtttgaaaaa 26918201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 47831200 - 47831156
Alignment:
Q  335 ataaattactccttagttcattcactttctcccatcatcatctca 379  Q
    ||||| ||||||||| ||| |||||||||||||||||||||||||    
T  47831200 ataaaatactccttacttctttcactttctcccatcatcatctca 47831156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 11690114 - 11690055
Alignment:
Q  354 attcactttctcccatcatcatctcatcactcacactattttatttctactaaaatagaa 413  Q
    |||||||||||| |||  ||||||||||||||| ||| ||| ||||||||||||| ||||    
T  11690114 attcactttctctcatactcatctcatcactcaaactctttcatttctactaaaagagaa 11690055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 526 - 601
Target Start/End: Original strand, 27524395 - 27524472
Alignment:
Q  526 atgaaaaacgaagttccatgaaatatttgaatatgttgtatg--catgaaatgcaaatttgtgaaaatatggattttt 601  Q
    |||||| || |||||||||||||||||| | |||| |||||   |||||||| ||||||||||||||| || ||||||    
T  27524395 atgaaatacaaagttccatgaaatattttagtatgatgtatatacatgaaatacaaatttgtgaaaatttgaattttt 27524472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 310 - 601
Target Start/End: Complemental strand, 3767606 - 3767312
Alignment:
Q  310 attaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccat--catc--atctcatcactcacactattttatttctacta 405  Q
    ||||| |||||||||||||||||||||||| |  |||||| | |||||||||||||||||  ||||  |||||||||||||   ||||| ||||  ||||    
T  3767606 attaaactcaaaattaaagtccaacataaaattatccttaatccattcactttctcccatatcatctcatctcatcactcagtgtatttcatttaaacta 3767507  T
Q  406 aaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaaagt 505  Q
    ||| |||||||  ||    ||||||||||||||| ||||| ||| ||||  ||   ||||| ||| |||||||||||||||||||||||||||||||| |    
T  3767506 aaaaagaacactagccttcagtcacacctaacccatcgttcctcatcgccactgggatcgtccatctcttgttagttttttcatgttagttatacaaaat 3767407  T
Q  506 agtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
    |||||||||||  ||||| ||   ||||| |||||| ||||||||||||| || |||||||||||||||| |||||||||||||||||| ||||||    
T  3767406 agtttgaaaaac-agagaacacagaaaacaaagttctatgaaatatttgagtaagttgtatgcatgaaatacaaatttgtgaaaatatgaattttt 3767312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 316 - 608
Target Start/End: Original strand, 32322043 - 32322340
Alignment:
Q  316 ctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcat-----cactcaca--ctattttatttctactaaaa 408  Q
    ||||| |||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||     ||||||||  |||||| | |||||||||||    
T  32322043 ctcaagattaaagtccaacataaaatactccttaattcatttactttctcccatcatcatctcatgtcatcactcacagtctatttcaattctactaaaa 32322142  T
Q  409 tagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaaagtagt 508  Q
     |||||||   | || ||||| || |||||| | ||| ||| ||||   ||  ||||| ||| |||||||| ||||||||||||||||||||||||||||    
T  32322143 -agaacactaaccgccagtcatacataacccattgttcctcatcgccaataggatcgtccatctcttgttatttttttcatgttagttatacaaagtagt 32322241  T
Q  509 ttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggatttttgtaattg 608  Q
    ||| ||||| ||||| | || ||||  |||||  || |||||||||| ||||||||||||||||||  ||||||||||||||||| | ||||| ||||||    
T  32322242 ttg-aaaaacagagaacgtggaaaataaagttatattaaatatttgagtatgttgtatgcatgaaaaacaaatttgtgaaaatattgttttttttaattg 32322340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 317 - 608
Target Start/End: Complemental strand, 20860322 - 20860025
Alignment:
Q  317 tcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatc-----actcacact--attttatttctactaaaat 409  Q
    |||||||||||||| |||||||| ||||||||| |  |||||||||||| ||||||| |||||||     || ||||||  ||||  ||| ||||||||     
T  20860322 tcaaaattaaagtcgaacataaaatactccttaatctattcactttctctcatcatcgtctcatctaatcacccacactctatttcttttatactaaaaa 20860223  T
Q  410 agaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaaagtagtt 509  Q
    |||||||  || |  |||   ||||||||| ||||| ||| || | |||   ||||| ||| || |||||||||||||||||||||||||||||||||||    
T  20860222 agaacactagccgtcagtttaacctaacccatcgttcctcatctccgctgggatcgtccatctcgtgttagttttttcatgttagttatacaaagtagtt 20860123  T
Q  510 tgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggatttttgtaattg 608  Q
    |||||||  | ||| |||| ||||| |||||| ||||||||||||| |||| |||| ||||||||| ||||||||||||||||||||||||| ||||||    
T  20860122 tgaaaaacaa-agaacatggaaaacaaagttctatgaaatatttgagtatgatgtaagcatgaaatacaaatttgtgaaaatatggatttttttaattg 20860025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 310 - 601
Target Start/End: Original strand, 9505267 - 9505562
Alignment:
Q  310 attaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcat---ctcatcactcacact--attttatttctact 404  Q
    |||||||||||||||||||| |||||||   ||||||||| |||||||||||||||||||||||||   |||||| ||||||||  ||||   || ||||    
T  9505267 attaagctcaaaattaaagttcaacatatgatactccttaattcattcactttctcccatcatcatgatctcatccctcacactctatttcggttttact 9505366  T
Q  405 aaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaaag 504  Q
    |||| | |||||  |  |  |||||||||||| |  ||||| |||  ||  | |   ||| || || || ||||||||||||| ||||| ||||||||||    
T  9505367 aaaaaacaacactagacgtcagtcacacctaatctatcgttcctcaccgtcgatgggatcctttatctcatgttagttttttcctgttaattatacaaag 9505466  T
Q  505 tagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
    ||||||||||||  | ||| |||||||||| |||||| ||||||||||||| |||||||||| |||||||| |||||||||||||||||| ||||||    
T  9505467 tagtttgaaaaac-atagaacatgaaaaacaaagttctatgaaatatttgagtatgttgtatacatgaaatacaaatttgtgaaaatatgaattttt 9505562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 474 - 601
Target Start/End: Complemental strand, 3555196 - 3555071
Alignment:
Q  474 ttgttagttttttcatgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaa 573  Q
    |||||| |||||||||||||||||||||||| ||||||||||||  |||| ||   ||||| ||||| |||||||||||| | ||||||| |||||| ||    
T  3555196 ttgttaattttttcatgttagttatacaaagcagtttgaaaaaa--gagaacaatgaaaacaaagtttcatgaaatatttcagtatgttgcatgcataaa 3555099  T
Q  574 atgcaaatttgtgaaaatatggattttt 601  Q
    || ||||||| |||||||||||||||||    
T  3555098 atacaaatttatgaaaatatggattttt 3555071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 481 - 601
Target Start/End: Original strand, 17913157 - 17913277
Alignment:
Q  481 ttttttcatgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatg-ttgtatgcatgaaatgcaa 579  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||| | ||||||||||||| |||| |||||||||||||    ||    
T  17913157 ttttttcatgttagttatacaaagtagtttg-aaaaatagagaacatggaaaacaaagtactatgaaatatttgagtatgtttgtatgcatgaatacaaa 17913255  T
Q  580 atttgtgaaaatatggattttt 601  Q
    ||||||||||  ||||||||||    
T  17913256 atttgtgaaacaatggattttt 17913277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 601
Target Start/End: Complemental strand, 42614846 - 42614775
Alignment:
Q  530 aaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
    ||||| |||||| |||||||| |||| ||||||| ||||||||||||||||||| ||||| |||||||||||    
T  42614846 aaaacaaagttctatgaaatacttgagtatgttgaatgcatgaaatgcaaatttatgaaattatggattttt 42614775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 319 - 380
Target Start/End: Complemental strand, 25344052 - 25343991
Alignment:
Q  319 aaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcat 380  Q
    |||||||||| |||||||||| |||| |||| | ||||||||||||||||||||||||||||    
T  25344052 aaaattaaagcccaacataaagtactacttaatccattcactttctcccatcatcatctcat 25343991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 305 - 381
Target Start/End: Original strand, 9040644 - 9040720
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatc 381  Q
    |||| |||| ||||||||||||||  ||| ||||| |||| |||| ||||||||||||||||||| |||||||||||    
T  9040644 ttatgattaggctcaaaattaaagctcaagataaaatactacttaattcattcactttctcccattatcatctcatc 9040720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 305 - 381
Target Start/End: Complemental strand, 16570816 - 16570740
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatc 381  Q
    |||| ||||| |||||||||||| | ||| ||||| ||||||||| ||| |||||||||| ||||||||||||||||    
T  16570816 ttatgattaaactcaaaattaaaatacaatataaaatactccttaattcgttcactttctgccatcatcatctcatc 16570740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 40434863 - 40434809
Alignment:
Q  356 tcactttctcccatcatcatctcatcactc--acactattttatttctactaaaa 408  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||| |||||    
T  40434863 tcactttctcccatcatcatctcatcactcatactctattttatttctattaaaa 40434809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 314 - 415
Target Start/End: Complemental strand, 3555362 - 3555255
Alignment:
Q  314 agctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatca-----tcatctcatcact--cacactattttatttctactaa 406  Q
    |||| ||||||||||| ||||||||| ||||| ||| | ||||||||||||| |||||     |||||||||||||  |||||||||| | |||||||||    
T  3555362 agcttaaaattaaagttcaacataaaatactcattaat-cattcactttctctcatcattatctcatctcatcactcacacactatttcacttctactaa 3555264  T
Q  407 aatagaaca 415  Q
    || ||||||    
T  3555263 aaaagaaca 3555255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 411
Target Start/End: Complemental strand, 25456073 - 25455973
Alignment:
Q  318 caaaattaaagtccaacataaattactccttagttcattcactttctcccatc-----atcatctcatcactcacact--attttatttctactaaaata 410  Q
    ||||||||||| ||| |||||| |||| |||| | |||||||||||| | |||     |||||||||||||||| |||  |||| |||||||||||||||    
T  25456073 caaaattaaagcccagcataaagtactacttaatccattcactttcttctatcatcatatcatctcatcactcaaactcgatttcatttctactaaaata 25455974  T
Q  411 g 411  Q
    |    
T  25455973 g 25455973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 601
Target Start/End: Complemental strand, 25343717 - 25343673
Alignment:
Q  557 tatgttgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
    |||||| |||||||||||| ||||||||||| |||||| ||||||    
T  25343717 tatgttttatgcatgaaatacaaatttgtgagaatatgaattttt 25343673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 601
Target Start/End: Complemental strand, 25654467 - 25654423
Alignment:
Q  557 tatgttgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
    |||||| |||||||||||| ||||||||||| |||||| ||||||    
T  25654467 tatgttttatgcatgaaatacaaatttgtgagaatatgaattttt 25654423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 316 - 600
Target Start/End: Original strand, 8410 - 8690
Alignment:
Q  316 ctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcactcacact--attttatttctactaa-aataga 412  Q
    ||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||  ||||  |||||||||| || |||    
T  8410 ctcaaaattaaagtccaacataaat-actctttaattcattcactttctcccatcatcatctcatcactcacgctctatttactttctactaagaaaaga 8508  T
Q  413 acaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaaagtagtttga 512  Q
    ||||  || || |||||| | |||||| ||||| ||| ||  || |   ||||||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  8509 acactagccgccagtcacgc-taacccatcgttcctcatcattgtttggatcgttcatctcttgttagttttttcacgttagttacacaaagtagtttga 8607  T
Q  513 aaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggatttt 600  Q
     ||   ||||| |||| ||||| |||||| ||||||||||||| |||| |||||||||||||||||||||    ||||||||||||||    
T  8608 gaagc-agagaacatggaaaacaaagttctatgaaatatttgagtatggtgtatgcatgaaatgcaaatt----aaaatatggatttt 8690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 6e-45; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 305 - 608
Target Start/End: Complemental strand, 32678410 - 32678101
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcat-----catctcatcactcaca--ctattttat 397  Q
    |||| ||||| ||||||||||||||| |||||||| ||||| ||| || ||||| |||||| ||||||     |||||||||||||| |  ||||||  |    
T  32678410 ttatgattaaactcaaaattaaagtc-aacataaaatactcgttaatttattcattttctcacatcatgatctcatctcatcactcatagtctatttcgt 32678312  T
Q  398 ttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagtta 497  Q
    ||||||||||| |||||||  |||    || ||||||||||| ||||| ||| |||| ||    ||||| ||| |||| |||||||||||||||||||||    
T  32678311 ttctactaaaaaagaacactagctatccgttacacctaacccatcgtttctcatcgccgcggggatcgtccatctcttattagttttttcatgttagtta 32678212  T
Q  498 tacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatg-ttgtatgcatgaaatgcaaatttgtgaaaatatgga 596  Q
    |||||||||||| | ||||| ||||| |||||||||| |||||| |||||||||||||  ||| ||||||||||||||| ||||||| ||||||||| ||    
T  32678211 tacaaagtagttcg-aaaaacagagaacatgaaaaacaaagttctatgaaatatttgagcatgtttgtatgcatgaaatacaaatttatgaaaatataga 32678113  T
Q  597 tttttgtaattg 608  Q
    ||||| ||||||    
T  32678112 tttttttaattg 32678101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 310 - 597
Target Start/End: Complemental strand, 8414498 - 8414206
Alignment:
Q  310 attaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatc-----tcatcactcacact--attttatttcta 402  Q
    ||||| |||||||| |||||| |||| |||| |||| ||| |||||||||||| | |||||||||||     ||||||||||||||  ||||  ||||||    
T  8414498 attaaactcaaaatcaaagtcaaacaaaaat-actctttaattcattcactttttaccatcatcatcctatctcatcactcacactctatttcgtttcta 8414400  T
Q  403 ctaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaa 502  Q
    |||||| |||||||  |  | ||| |||||||||||| ||||| |||  ||||| |   |||||  || |||||||||||||| |||||||||| || ||    
T  8414399 ctaaaaaagaacactagtcgttagccacacctaacccatcgtttctcaccgctgttgggatcgtcaatctcttgttagtttttccatgttagttgtaaaa 8414300  T
Q  503 agtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggat 597  Q
    |||| ||||||||| |||||  |||||||||| |||||| |||||||||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  8414299 agtattttgaaaaa-tagagtacatgaaaaacaaagttctatgaaatatttgaacatgttgtatgtatgaaatacaaatttgtgaaaatatggat 8414206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 476 - 599
Target Start/End: Complemental strand, 27320256 - 27320134
Alignment:
Q  476 gttagttttttcatgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaat 575  Q
    |||||||||||||||||||||||||||||| |||||| |||| ||||| | |||||||| |||||||||||||||||||| |||||||||| ||| ||||    
T  27320256 gttagttttttcatgttagttatacaaagttgtttgagaaaacagagaacttgaaaaacaaagttccatgaaatatttgagtatgttgtatacat-aaat 27320158  T
Q  576 gcaaatttgtgaaaatatggattt 599  Q
     ||| || ||||||| || |||||    
T  27320157 acaatttagtgaaaaaatagattt 27320134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 484 - 594
Target Start/End: Original strand, 11911987 - 11912096
Alignment:
Q  484 tttcatgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaattt 583  Q
    |||| |||||||| |||||||||||||||||||  ||||| |||| ||||  |||||| |||||||| |||||||||||||||||||||||| |||||||    
T  11911987 tttcttgttagttttacaaagtagtttgaaaaac-agagaacatggaaaataaagttctatgaaatacttgaatatgttgtatgcatgaaatacaaattt 11912085  T
Q  584 gtgaaaatatg 594  Q
    |||||||||||    
T  11912086 gtgaaaatatg 11912096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 462 - 601
Target Start/End: Original strand, 17531000 - 17531131
Alignment:
Q  462 atcgttcatttcttgttagttttttcatgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgt 561  Q
    ||||||||| || ||||||||||||||||||| ||||||| ||||||||| ||||| | ||| |||| ||||| ||||||       ||||||| ||| |    
T  17531000 atcgttcatctcatgttagttttttcatgttaattatacatagtagtttg-aaaaacatagaacatggaaaacaaagttc-------tatttgagtatat 17531091  T
Q  562 tgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
    ||||| |||||||| ||||| ||| |||||||| ||||||    
T  17531092 tgtatacatgaaatacaaatctgtaaaaatatgaattttt 17531131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 536 - 608
Target Start/End: Complemental strand, 42616387 - 42616315
Alignment:
Q  536 aagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggatttttgtaattg 608  Q
    |||||||||||||| ||||||||||||  | ||||||||| ||||||| ||||||||| ||||||| ||||||    
T  42616387 aagttccatgaaatgtttgaatatgttacaagcatgaaatacaaatttatgaaaatatagatttttttaattg 42616315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 305 - 386
Target Start/End: Original strand, 11911817 - 11911901
Alignment:
Q  305 ttatcattaagctcaaaattaaagt-ccaacataaattactccttagttcattcactttctcccatca--tcatctcatcactca 386  Q
    |||| |||||||||||||||||||| |||||||||| ||||  ||| || |||| |||||||||||||  || ||||||||||||    
T  11911817 ttatgattaagctcaaaattaaagtcccaacataaaatactgtttaatttattcgctttctcccatcatctcgtctcatcactca 11911901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 491 - 585
Target Start/End: Complemental strand, 48640954 - 48640864
Alignment:
Q  491 ttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgt 585  Q
    |||| |||| ||||| |||||||||| |||||| |||||||||| || |   ||||||| ||||| ||||||||||||||||||  |||||||||    
T  48640954 ttaggtatataaagttgtttgaaaaa-tagagaacatgaaaaacaaaat---atgaaatgtttgagtatgttgtatgcatgaaacacaaatttgt 48640864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 482 - 608
Target Start/End: Complemental strand, 4635157 - 4635037
Alignment:
Q  482 tttttcatgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaat 581  Q
    ||||||||| ||||||| |||||| ||||||||||    ||| |||| ||||  |||||   |||||||||||| ||||||||| | ||||||  |||||    
T  4635157 tttttcatgctagttatgcaaagttgtttgaaaaat---agaacatggaaaataaagtt---tgaaatatttgagtatgttgtaggaatgaaacacaaat 4635064  T
Q  582 ttgtgaaaatatggatttttgtaattg 608  Q
    | || ||||||| ||||||| ||||||    
T  4635063 tcgtaaaaatatagatttttttaattg 4635037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 4919659 - 4919709
Alignment:
Q  331 caacataaattactccttagttcattcactttctcccatcatcatctcatc 381  Q
    ||||||||| ||||||||  | ||||||||||||||| |||||||||||||    
T  4919659 caacataaaatactccttgatccattcactttctcccttcatcatctcatc 4919709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 310 - 417
Target Start/End: Original strand, 17530841 - 17530955
Alignment:
Q  310 attaagctcaaaattaaa----gtccaacataaattactccttagttcattcactttctcccatca--tcatctcatcactcaca--ctattttatttct 401  Q
    ||||||||||||||||||    |||||||| ||| |||| || | |||||||||||||||||||||  |||||||||  ||||||  ||||||  ||| |    
T  17530841 attaagctcaaaattaaattaagtccaacaaaaaatacttctaa-ttcattcactttctcccatcatctcatctcattcctcacactctatttcgtttat 17530939  T
Q  402 actaaaatagaacacc 417  Q
    ||||||| ||||||||    
T  17530940 actaaaaaagaacacc 17530955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 584
Target Start/End: Complemental strand, 44581418 - 44581370
Alignment:
Q  536 aagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttg 584  Q
    ||||||||| |||||||||| |||| ||||| |||||||||||| ||||    
T  44581418 aagttccataaaatatttgagtatggtgtatacatgaaatgcaactttg 44581370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 305 - 601
Target Start/End: Complemental strand, 7239233 - 7238945
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcactcacactattttatttctact 404  Q
    |||| ||||||||||||| ||||||||||||||||  ||| |||| ||||||||||||||| |||||    ||||     ||| ||||||  ||| |||     
T  7239233 ttatgattaagctcaaaactaaagtccaacataaaacacttcttacttcattcactttctctcatca----ctca-----cactctatttcgtttatacc 7239143  T
Q  405 aaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaaag 504  Q
    |||| |||||||  || || ||||| ||||||| | |||||||||  ||  | |   ||||| ||| |||||||||||||||||||||||||||| ||||    
T  7239142 aaaaaagaacactagccgccagtcatacctaactcatcgttgctcaccgtcgttgggatcgtccatctcttgttagttttttcatgttagttatagaaag 7239043  T
Q  505 tagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatg-ttgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
    ||||||||||||| ||||| | |  ||||| |||||| ||||||||||||| |||| ||||||||||||||| ||||||||| |||||||| ||||||    
T  7239042 tagtttgaaaaaacagagaacctagaaaacaaagttctatgaaatatttgagtatgtttgtatgcatgaaatacaaatttgttaaaatatgaattttt 7238945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 305 - 601
Target Start/End: Complemental strand, 7244409 - 7244121
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcactcacactattttatttctact 404  Q
    |||| ||||||||||||| ||||||||||||||||  ||| |||| ||||||||||||||| |||||    ||||     ||| ||||||  ||| |||     
T  7244409 ttatgattaagctcaaaactaaagtccaacataaaacacttcttacttcattcactttctctcatca----ctca-----cactctatttcgtttatacc 7244319  T
Q  405 aaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaaag 504  Q
    |||| |||||||  || || ||||| ||||||| | |||||||||  ||  | |   ||||| ||| |||||||||||||||||||||||||||| ||||    
T  7244318 aaaaaagaacactagccgccagtcatacctaactcatcgttgctcaccgtcgttgggatcgtccatctcttgttagttttttcatgttagttatagaaag 7244219  T
Q  505 tagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatg-ttgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
    ||||||||||||| ||||| | |  ||||| |||||| ||||||||||||| |||| ||||||||||||||| ||||||||| |||||||| ||||||    
T  7244218 tagtttgaaaaaacagagaacctagaaaacaaagttctatgaaatatttgagtatgtttgtatgcatgaaatacaaatttgttaaaatatgaattttt 7244121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 481 - 592
Target Start/End: Original strand, 20665743 - 20665853
Alignment:
Q  481 ttttttcatgttagttatacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaa 580  Q
    |||||||||||||||| ||||||||||||||||||| | |||| |||| ||||| |||||| ||||||||||||| ||||||||||||||||||| ||||    
T  20665743 ttttttcatgttagttgtacaaagtagtttgaaaaatt-gagaacatggaaaacaaagttctatgaaatatttgagtatgttgtatgcatgaaatacaaa 20665841  T
Q  581 tttgtgaaaata 592  Q
    ||||||||||||    
T  20665842 tttgtgaaaata 20665853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 305 - 594
Target Start/End: Complemental strand, 1498148 - 1497853
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcat-----ctcatcactcacactat--tttat 397  Q
    |||| ||||||||||||||| ||||||||| |||| ||||||||| | |||||||||||||||||||||||     ||||||||||||||| |  ||  |    
T  1498148 ttatgattaagctcaaaattgaagtccaacctaaaatactccttaatacattcactttctcccatcatcatttcatctcatcactcacactctaattcgt 1498049  T
Q  398 ttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagtta 497  Q
    || | | |||| |||||||  |  |    |||| |||||| | ||||| |||  ||| |  |  ||||| ||| |||| ||||||||||||| |||||||    
T  1498048 ttttgcaaaaaaagaacacttgtcgtcgatcacccctaactcatcgttcctcaccgccgtcaggatcgtccatctctttttagttttttcatattagtta 1497949  T
Q  498 tacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatg 594  Q
    || ||||||||||||||||  |||||  ||| ||||| |||||| ||||||||||||| ||||||||||  ||||||  ||||||||||||||||||    
T  1497948 taaaaagtagtttgaaaaac-agagaatatggaaaacaaagttctatgaaatatttgagtatgttgtatagatgaaacacaaatttgtgaaaatatg 1497853  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 381
Target Start/End: Original strand, 17770444 - 17770520
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatc 381  Q
    |||| ||||||||||||||||||| |||||||||| ||||||||| |||||||||||  || |||| ||||||||||    
T  17770444 ttattattaagctcaaaattaaagcccaacataaaatactccttaattcattcacttcatctcatcctcatctcatc 17770520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 531 - 594
Target Start/End: Original strand, 17770646 - 17770709
Alignment:
Q  531 aaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatg 594  Q
    |||| ||||||||| |||||||||||||||||| ||| |||| || ||||||||||||||||||    
T  17770646 aaactaagttccataaaatatttgaatatgttgcatgtatgatatacaaatttgtgaaaatatg 17770709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 416
Target Start/End: Original strand, 20665522 - 20665589
Alignment:
Q  351 ttcattcactttctcccatcatcatctcatcactc--acactattttatttctactaaaatagaacac 416  Q
    |||||||||||||| | ||||||||||||||||||  || ||||||| |||||||||||| |||||||    
T  20665522 ttcattcactttcttcgatcatcatctcatcactcagactctattttgtttctactaaaaaagaacac 20665589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 505
Target Start/End: Original strand, 42306975 - 42307004
Alignment:
Q  476 gttagttttttcatgttagttatacaaagt 505  Q
    ||||||||||||||||||||||||||||||    
T  42306975 gttagttttttcatgttagttatacaaagt 42307004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 372 - 437
Target Start/End: Original strand, 20665672 - 20665739
Alignment:
Q  372 tcatctcatcactcacact--attttatttctactaaaatagaacaccggctgctagtcacacctaac 437  Q
    |||||||||||||||||||  ||||| |||||||||||| | |||||  ||  |||||||||||||||    
T  20665672 tcatctcatcactcacactctattttgtttctactaaaaaaaaacactagccactagtcacacctaac 20665739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 314 - 534
Target Start/End: Complemental strand, 344294 - 344074
Alignment:
Q  314 agctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatcactc--acactattttatttctactaaaatag 411  Q
    |||||||||||||||||||| ||||| || || ||| || ||||||||||| ||||||||||||||||||||  || ||||||  |||||||||||| ||    
T  344294 agctcaaaattaaagtccaatataaaatattcattaattaattcactttctgccatcatcatctcatcactcatactctatttcgtttctactaaaaaag 344195  T
Q  412 aacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaaagtagtttg 511  Q
    |||||  || || ||||||||||||||| ||||| |||  |||  |||  ||| | ||| ||||||||||||||||||||||||||| |||| || |||     
T  344194 aacactagccgccagtcacacctaacccatcgttcctcaccgcatctaggatcatccatctcttgttagttttttcatgttagttattcaaaatatttt- 344096  T
Q  512 aaaaaatagagagcatgaaaaac 534  Q
     ||||||||||| |||| |||||    
T  344095 -aaaaatagagaacatggaaaac 344074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 608
Target Start/End: Complemental strand, 344066 - 344022
Alignment:
Q  564 tatgcatgaaatgcaaatttgtgaaaatatggatttttgtaattg 608  Q
    |||||||||||  ||||||||||||||||| ||||||| ||||||    
T  344066 tatgcatgaaaaacaaatttgtgaaaatatagatttttttaattg 344022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 335 - 595
Target Start/End: Complemental strand, 2471 - 2205
Alignment:
Q  335 ataaattactccttagttcattcactttctcccatcatcatctcatc-----actcacact--attttatttctactaaaatagaacaccggctgctagt 427  Q
    ||||| ||||||||| ||| |||||||||| ||||||||||||||||     |||||||||  ||| | ||||||| |||| |||||||   | || |||    
T  2471 ataaaatactccttaattcgttcactttctgccatcatcatctcatctcgtcactcacactctattctgtttctacgaaaaaagaacactaaccgccagt 2372  T
Q  428 cacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagttatacaaagtagtttgaaaaaatagagagcat 527  Q
    |||||||||||| ||||| |||  | | | |   ||| | ||| | |||||||||||||||| |||||||||||||||||||||| ||||||| || |||    
T  2371 cacacctaacccatcgtttctcaccaccgatgggatcatccatcttttgttagttttttcattttagttatacaaagtagtttga-aaaatagtgaacat 2273  T
Q  528 gaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatgg 595  Q
    ||  |||  ||||| | ||||||||||||||||||||||  | ||||| |||||||||||||||||||    
T  2272 gacgaacagagttctacgaaatatttgaatatgttgtatataagaaatacaaatttgtgaaaatatgg 2205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 305 - 608
Target Start/End: Original strand, 6535 - 6830
Alignment:
Q  305 ttatcattaagctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatc-----tcatcactcacact--attttat 397  Q
    |||| ||||||||||||||||||||| || ||||| ||||| ||| ||||||||||||||||||||||||||     |||||| |||||||  ||||  |    
T  6535 ttatgattaagctcaaaattaaagtc-aatataaaatactctttaattcattcactttctcccatcatcatcccatctcatcattcacactctatttcgt 6633  T
Q  398 ttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgtcgctgctaaaatcgttcatttcttgttagttttttcatgttagtta 497  Q
    ||||||||||   ||||||  ||| | ||||| ||||||||| || ||   ||||         ||||| ||| ||||||| ||||||||||||||||||    
T  6634 ttctactaaataggaacactagcttccagtcatacctaacccatcatt---cgtc---------atcgtccatctcttgttcgttttttcatgttagtta 6721  T
Q  498 tacaaagtagtttgaaaaaatagagagcatgaaaaacgaagttccatgaaatatttgaatatgttgtatgcatgaaatgcaaatttgtgaaaatatggat 597  Q
    ||||| ||||||||| |||  | ||| |||| ||||| |||||| ||||| ||||| | ||||||||| || ||||||  ||||||||||||||||||||    
T  6722 tacaa-gtagtttgataaac-atagaacatggaaaacaaagttctatgaagtatttcagtatgttgtacgcgtgaaatataaatttgtgaaaatatggat 6819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 318 - 380
Target Start/End: Original strand, 33968 - 34030
Alignment:
Q  318 caaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcat 380  Q
    ||||||||||| |||||||||| |||| |||| | ||||||||||||||||||||||||||||    
T  33968 caaaattaaagcccaacataaagtactacttaatccattcactttctcccatcatcatctcat 34030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 318 - 381
Target Start/End: Original strand, 13991 - 14054
Alignment:
Q  318 caaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatctcatc 381  Q
    ||||||||||| ||| |||||| |||| |||| | |||||||||||| ||||||||||||||||    
T  13991 caaaattaaagcccagcataaagtactacttaatccattcactttcttccatcatcatctcatc 14054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 601
Target Start/End: Original strand, 34262 - 34306
Alignment:
Q  557 tatgttgtatgcatgaaatgcaaatttgtgaaaatatggattttt 601  Q
    |||||| |||||||||||| ||||||||||| |||||| ||||||    
T  34262 tatgttttatgcatgaaatacaaatttgtgagaatatgaattttt 34306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 524 - 469
Alignment:
Q  315 gctcaaaattaaagtccaacataaattactccttagttcattcactttctcccatc 370  Q
    ||||||||||||||||||||||||| ||||  ||| | ||||||||||||| ||||    
T  524 gctcaaaattaaagtccaacataaaatactttttaatccattcactttctctcatc 469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 319 - 377
Target Start/End: Complemental strand, 1787 - 1729
Alignment:
Q  319 aaaattaaagtccaacataaattactccttagttcattcactttctcccatcatcatct 377  Q
    ||||||||| ||||||||||| ||||  ||| | ||||||||||||| |||||||||||    
T  1787 aaaattaaaatccaacataaaatactttttaatccattcactttctctcatcatcatct 1729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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