View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO6103A-LTR4-TNT-insertion-4 (Length: 476)
Name: SO6103A-LTR4-TNT-insertion-4
Description: SO6103A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO6103A-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 8 - 468
Target Start/End: Complemental strand, 2549978 - 2549518
Alignment:
| Q |
8 |
atctatataatcttttttaaggcatactaaaaatttaaaatatcataagataataaacttgaattaccagattttatgttggaatcttgtatcaagatat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2549978 |
atctatataatcttttttaaggcatactaaaaatttaaaatatcataagataataaacttgaattaccagattttatgttggaatcttgtatcaagatat |
2549879 |
T |
|
| Q |
108 |
tattggaatgagatatatcaaacccatcagtgttggggctagtagcaggagaactaatggatatataggaaaatgttgcatgattgcacatattaacaga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2549878 |
tattggaatgagatatatcaaacccatcagtgttggggctagtagcaggagaactaatggatatataggaaaatgttgcatgattgcacatattaacaga |
2549779 |
T |
|
| Q |
208 |
aacatgagatcttgggctatttaagatcctcaaatttcgaacattgagatcattacaagaatgaaaatgcaacatctgtaccatcnnnnnnnttatgtca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2549778 |
aacatgagatcttgggctatttaagatcctcaaatttcgaacattgagatcattacaagaatgaaaatgcaacatctgtaccatcaaaaaaattatgtca |
2549679 |
T |
|
| Q |
308 |
catgatacatactgacaatcacttcnnnnnnntaatatggagcttgattgtattatatattccaagatctacaaagagttgatgtgcataggtatagaat |
407 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2549678 |
catgatacatactgacaatcacttcaaaaaaataatatggagcttgattgtattatatattccaagatctacaaagagttgatgtgcataggtatagaat |
2549579 |
T |
|
| Q |
408 |
caattacatttgtataatcttttaccaaatcaaagtataacttcattttgcaatcaaatta |
468 |
Q |
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| T |
2549578 |
caattacatttgtataatcttttaccaaatcaaagtataacttcattttgcaatcaaatta |
2549518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 60 - 289
Target Start/End: Complemental strand, 2565100 - 2564871
Alignment:
| Q |
60 |
ataaacttgaattaccagattttatgttggaatcttgtatcaagatattattggaatgagatatatcaaacccatcagtgttggggctagtagcaggaga |
159 |
Q |
| |
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|||||||| | ||||| ||| |||| || |||| || |||| |||||||||||||| |||| || ||||| ||||||||||||||||||| ||||| ||| |
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| T |
2565100 |
ataaactttacttaccggatcttatcttagaattttctatcgagatattattggaacgagaaatgtcaaatccatcagtgttggggctagcagcagcaga |
2565001 |
T |
|
| Q |
160 |
actaatggatatataggaaaatgttgcatgattgcacatattaacagaaacatgagatcttgggctatttaagatcctcaaatttcgaacattgagatca |
259 |
Q |
| |
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| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||| || | |||||||||| || |
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| T |
2565000 |
attaatagatatatgagaaaatgttgaatgattgcacatattaacagaaacatgagattttgggctattcaagatcctcaagttcctaacattgagacca |
2564901 |
T |
|
| Q |
260 |
ttacaagaatgaaaatgcaacatctgtacc |
289 |
Q |
| |
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|| || ||||| ||| ||||||||||||| |
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| T |
2564900 |
ttgcaggaatggaaaaacaacatctgtacc |
2564871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 60 - 290
Target Start/End: Complemental strand, 2555426 - 2555196
Alignment:
| Q |
60 |
ataaacttgaattaccagattttatgttggaatcttgtatcaagatattattggaatgagatatatcaaacccatcagtgttggggctagtagcaggaga |
159 |
Q |
| |
|
|||||||| | ||||| ||| |||| | |||| || |||||||| |||| ||||| |||| || ||||||||||||||||||||||||||||||| ||| |
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| T |
2555426 |
ataaactttacttaccggatcttatcatagaattttctatcaagacattactggaacgagaaatgtcaaacccatcagtgttggggctagtagcagcaga |
2555327 |
T |
|
| Q |
160 |
actaatggatatataggaaaatgttgcatgattgcacatattaacagaaacatgagatcttgggctatttaagatcctcaaatttcgaacattgagatca |
259 |
Q |
| |
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| |||| ||||||| |||||||||| ||||||||||||| |||||| ||||||||||||||||||||| | ||||||||| |||| |||||||||| || |
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| T |
2555326 |
attaatagatatatgagaaaatgttgaatgattgcacatagtaacagcaacatgagatcttgggctattcaggatcctcaagtttctaacattgagacca |
2555227 |
T |
|
| Q |
260 |
ttacaagaatgaaaatgcaacatctgtacca |
290 |
Q |
| |
|
|| || ||||| ||| |||||||| ||||| |
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|
| T |
2555226 |
ttgcaggaatggaaaaacaacatctatacca |
2555196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 1830102 - 1829894
Alignment:
| Q |
22 |
ttttaaggcatactaaaaatttaaaatatcataagataa--taaacttgaattaccagattttatgttggaatcttgtatcaagatattattggaatgag |
119 |
Q |
| |
|
||||||| ||||||||| ||||||||||| |||| || | |||| || |||||||||||||||||||||||| || ||| |||| | ||||| || |
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| T |
1830102 |
ttttaagacatactaaatatttaaaatattataatattacataaagtttaattaccagattttatgttggaattttctatacgaatatcagtggaaaaag |
1830003 |
T |
|
| Q |
120 |
atatatcaaacccatcagtgttggggctagtagcaggagaactaatggatatataggaaaatgttgcatgattgcacatattaacagaaacatgagatct |
219 |
Q |
| |
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| || |||||||||||||||||||| ||||||||||| ||| | ||||||| || || ||||||| | ||||||||||||||| || |||||||| || |
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| T |
1830002 |
aaatgtcaaacccatcagtgttgggactagtagcaggtgaattgatggatacatgagagaatgttgtacgattgcacatattaatggatacatgagaact |
1829903 |
T |
|
| Q |
220 |
tgggctatt |
228 |
Q |
| |
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|||||||| |
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| T |
1829902 |
cgggctatt |
1829894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 1864547 - 1864339
Alignment:
| Q |
22 |
ttttaaggcatactaaaaatttaaaatatcataagataa--taaacttgaattaccagattttatgttggaatcttgtatcaagatattattggaatgag |
119 |
Q |
| |
|
||||||| ||||||||| ||||||||||| |||| || | |||| || |||||||||||||||||||||||| || ||| |||| | ||||| || |
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| T |
1864547 |
ttttaagacatactaaatatttaaaatattataatattacataaagtttaattaccagattttatgttggaattttctatacgaatatcagtggaaaaag |
1864448 |
T |
|
| Q |
120 |
atatatcaaacccatcagtgttggggctagtagcaggagaactaatggatatataggaaaatgttgcatgattgcacatattaacagaaacatgagatct |
219 |
Q |
| |
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| || |||||||||||||||||||| ||||||||||| ||| | ||||||| || || ||||||| | ||||||||||||||| || |||||||| || |
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| T |
1864447 |
aaatgtcaaacccatcagtgttgggactagtagcaggtgaattgatggatacatgagagaatgttgtacgattgcacatattaatggatacatgagaact |
1864348 |
T |
|
| Q |
220 |
tgggctatt |
228 |
Q |
| |
|
|||||||| |
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|
| T |
1864347 |
cgggctatt |
1864339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 206
Target Start/End: Complemental strand, 2531963 - 2531829
Alignment:
| Q |
72 |
taccagattttatgttggaatcttgtatcaagatattattggaatgagatatatcaaacccatcagtgttggggctagtagcaggagaactaatggatat |
171 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| | |||| || || |||||||||||||| |||||||||||| |||| ||| |||| ||||| |
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|
| T |
2531963 |
taccagattttatgttggaatcatgtatcacaatatgagtggataaagcaatgtcaaacccatcagtattggggctagtaccaggtgaattaatagatat |
2531864 |
T |
|
| Q |
172 |
ataggaaaatgttgcatgattgcacatattaacag |
206 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||| |
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| T |
2531863 |
attagaaaatgttgcaccattgcacatattaacag |
2531829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 206
Target Start/End: Complemental strand, 2541506 - 2541372
Alignment:
| Q |
72 |
taccagattttatgttggaatcttgtatcaagatattattggaatgagatatatcaaacccatcagtgttggggctagtagcaggagaactaatggatat |
171 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| | |||| || || |||||||||||||| |||||||||||| |||| ||| |||| ||||| |
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|
| T |
2541506 |
taccagattttatgttggaatcatgtatcacaatatgagtggataaagcaatgtcaaacccatcagtattggggctagtaccaggtgaattaatagatat |
2541407 |
T |
|
| Q |
172 |
ataggaaaatgttgcatgattgcacatattaacag |
206 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||| |
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|
| T |
2541406 |
attagaaaatgttgcaccattgcacatattaacag |
2541372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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