View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO6142-LTR4-TNT-insertion-2 (Length: 172)
Name: SO6142-LTR4-TNT-insertion-2
Description: SO6142-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO6142-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 13380035 - 13380190
Alignment:
| Q |
8 |
ttatatgcatcgccaatgtttgatgaaggaatacatgagtggttacataccttctagagaacttgaaaggagaaaggactccagatgtgtccctagcagc |
107 |
Q |
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| T |
13380035 |
ttatatgcatcgccaatgtttgatgaaggaatacatgagtggttacataccttctagagaacttgaaaggagaaaggactccagatgtgtccctagcagc |
13380134 |
T |
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| Q |
108 |
ccagccgaaagcttgtttgggatgttcagtttctggttttgaggccatttcaattg |
163 |
Q |
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| T |
13380135 |
ccagccgaaagcttgtttgggatgttcagtttctggttttgaggccatttcaattg |
13380190 |
T |
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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 13376491 - 13376555
Alignment:
| Q |
55 |
taccttctagagaacttgaaaggagaaaggactccagatgtgtccctagcagcccagccgaaagc |
119 |
Q |
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| T |
13376491 |
taccttctagagaatttgaatggagacaggactccagatgagtccctagctgcccatccgaaagc |
13376555 |
T |
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