View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO6142-LTR4-TNT-insertion-3 (Length: 506)
Name: SO6142-LTR4-TNT-insertion-3
Description: SO6142-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO6142-LTR4-TNT-insertion-3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 489; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 8 - 496
Target Start/End: Complemental strand, 42315359 - 42314871
Alignment:
| Q |
8 |
gtcgtacccgtggtcataatagctgatttgatagctgctggactccatttaggatgaagtgttttgagaaggcctgctatgccagacacatgagggcatg |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42315359 |
gtcgtacccgtggtcataatagctgatttgatagctgctggactccatttaggatgaagtgttttgagaaggcctgctatgccagacacatgagggcatg |
42315260 |
T |
|
| Q |
108 |
ccatagaagttccagacaaggatttgtacgaaatccttctattgatttctgtgtaagcagcaattatgttcactccaggtgcagtgatgtctggctggaa |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42315259 |
ccatagaagttccagacaaggatttgtacgaaatccttctattgatttctgtgtaagcagcaattatgttcactccaggtgcagtgatgtctggctggaa |
42315160 |
T |
|
| Q |
208 |
cacaagacacaataaacaattgtcacaaaaacatctagactttatatcaatgtcctgtttaaagtctgtaattgtgtttcatagtgttgattgaaattaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42315159 |
cacaagacacaataaacaattgtcacaaaaacatctagactttatatcaatgtcctgtttaaagtctgtaattgtgtttcatagtgttgattgaaattaa |
42315060 |
T |
|
| Q |
308 |
atgtaaacataacaaagttcatgttgatgaaagaaaaggcaacaaacttttagaatggatggaataatggtgctaggtccccttgatgaaaatgaagcaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42315059 |
atgtaaacataacaaagttcatgttgatgaaagaaaaggcaacaaacttttagaatggatggaataatggtgctaggtccccttgatgaaaatgaagcaa |
42314960 |
T |
|
| Q |
408 |
tcactggagctggaattattggaatttctgttattgcttttgttatgtaagcaacagggttccttaaatatatataaatagagtcatta |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42314959 |
tcactggagctggaattattggaatttctgttattgcttttgttatgtaagcaacagggttccttaaatatatataaatagagtcatta |
42314871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 42325094 - 42325003
Alignment:
| Q |
43 |
tgctggactccatttaggatgaagtgttttgagaaggcctgctatgccagacacatgagggcatgccatagaagttccagacaaggatttgt |
134 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||| |||| |||||||||| |||| || || |||||||| ||||| ||||||| |
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| T |
42325094 |
tgctggactccatttagaatgaagtgttttgagaagacctagtatgtcagacacatgggggcttgacaaagaagttcatgacaatgatttgt |
42325003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 42324588 - 42324543
Alignment:
| Q |
426 |
ttggaatttctgttattgcttttgttatgtaagcaacagggttcct |
471 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
42324588 |
ttggaatttctgttattgcttttgccatgtaagaaacagggttcct |
42324543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 37016375 - 37016463
Alignment:
| Q |
32 |
gatttgatagctgctggactccatttaggatgaagtgttttgagaaggcctgctatgccagacacatgagggcatgccatagaagttcc |
120 |
Q |
| |
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|||||||| || ||||||||||| ||||||||||||| |||||||| || | ||||||| |||||||| || | ||| |||||||| |
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|
| T |
37016375 |
gatttgatggcagctggactccaactaggatgaagtgtcttgagaagaccgacaatgccagcaacatgaggacaagacattgaagttcc |
37016463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 31049651 - 31049759
Alignment:
| Q |
12 |
tacccgtggtcataatagctgatttgatagctgctggactccatttaggatgaagtgttttgagaaggcctgctatgccagacacatgagggcatgccat |
111 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| || || |||||| |||||||| || | ||| |
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| T |
31049651 |
tacctgtggtcataatagctgatttaatagctgctggactccaattaggatgaagtgttttgataagtccagcagtgccagcaacatgaggacaagacat |
31049750 |
T |
|
| Q |
112 |
agaagttcc |
120 |
Q |
| |
|
||||||||| |
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|
| T |
31049751 |
agaagttcc |
31049759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 31061974 - 31062082
Alignment:
| Q |
12 |
tacccgtggtcataatagctgatttgatagctgctggactccatttaggatgaagtgttttgagaaggcctgctatgccagacacatgagggcatgccat |
111 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| || || | |||| ||||||||||| | ||| |
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| T |
31061974 |
taccagtggtcataatagctgatttaatagctgctggactccaattaggatgaagtgttttgataagtccagcagtcccagcaacatgagggcaagacat |
31062073 |
T |
|
| Q |
112 |
agaagttcc |
120 |
Q |
| |
|
||||||||| |
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|
| T |
31062074 |
agaagttcc |
31062082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 31162547 - 31162655
Alignment:
| Q |
12 |
tacccgtggtcataatagctgatttgatagctgctggactccatttaggatgaagtgttttgagaaggcctgctatgccagacacatgagggcatgccat |
111 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| || || |||||| |||||||| || | ||| |
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|
| T |
31162547 |
taccagtggtcatgatagctgatttaatagctgctggactccaattaggatgaagtgttttgataagtccagcagtgccagcaacatgaggacaagacat |
31162646 |
T |
|
| Q |
112 |
agaagttcc |
120 |
Q |
| |
|
||||||||| |
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|
| T |
31162647 |
agaagttcc |
31162655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 31203091 - 31202982
Alignment:
| Q |
11 |
gtacccgtggtcataatagctgatttgatagctgctggactccatttaggatgaagtgttttgagaaggcctgctatgccagacacatgagggcatgcca |
110 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||||||||||| |||||||| | |||||||| ||| || || ||||| | ||||||||||| | || |
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|
| T |
31203091 |
gtacctgtggtcatgatagctgatttaatagctgctggactccaattaggatgcaatgttttgataagtcccgcaatgccggcaacatgagggcaagaca |
31202992 |
T |
|
| Q |
111 |
tagaagttcc |
120 |
Q |
| |
|
|||||||||| |
|
|
| T |
31202991 |
tagaagttcc |
31202982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 31144723 - 31144831
Alignment:
| Q |
12 |
tacccgtggtcataatagctgatttgatagctgctggactccatttaggatgaagtgttttgagaaggcctgctatgccagacacatgagggcatgccat |
111 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||| ||| || || ||||| |||||||| || | ||| |
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|
| T |
31144723 |
taccagtggtcatgatagctgatttaatagctgcaggactccaattaggatgaagtgttttgataagtccagcagtgccaacaacatgaggacaagacat |
31144822 |
T |
|
| Q |
112 |
agaagttcc |
120 |
Q |
| |
|
||||||||| |
|
|
| T |
31144823 |
agaagttcc |
31144831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 31107145 - 31107207
Alignment:
| Q |
12 |
tacccgtggtcataatagctgatttgatagctgctggactccatttaggatgaagtgttttga |
74 |
Q |
| |
|
|||| |||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31107145 |
taccagtggtcattatagccgatttaatagctgctggactccaattaggatgaagtgttttga |
31107207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 24268766 - 24268666
Alignment:
| Q |
20 |
gtcataatagctgatttgatagctgctggactccatttaggatgaagtgttttgagaaggcctgctatgccagacacatgagggcatgccatagaagttc |
119 |
Q |
| |
|
||||| ||||| ||||| | |||||| |||||||| ||||||| || |||||||||||| | | ||| |||| ||||||||||||| |||||||||| |
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|
| T |
24268766 |
gtcatgatagcagatttaaaagctgcaggactccaattaggataaattgttttgagaagagcaacaatggcagaaacatgagggcatgatatagaagttc |
24268667 |
T |
|
| Q |
120 |
c |
120 |
Q |
| |
|
| |
|
|
| T |
24268666 |
c |
24268666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 42736299 - 42736246
Alignment:
| Q |
12 |
tacccgtggtcataatagctgatttgatagctgctggactccatttaggatgaa |
65 |
Q |
| |
|
|||| |||||||| || ||||| |||||||||||||||||||| | |||||||| |
|
|
| T |
42736299 |
tacctgtggtcatgattgctgacttgatagctgctggactccaatcaggatgaa |
42736246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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