View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO6142A-LTR4-TNT-insertion-4 (Length: 206)

Name: SO6142A-LTR4-TNT-insertion-4
Description: SO6142A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO6142A-LTR4-TNT-insertion-4
SO6142A-LTR4-TNT-insertion-4
[»] chr4 (3 HSPs)
chr4 (8-197)||(44186099-44186288)
chr4 (8-182)||(4877791-4877965)
chr4 (8-197)||(1327252-1327441)
[»] chr8 (1 HSPs)
chr8 (8-98)||(26532336-26532426)
[»] chr7 (1 HSPs)
chr7 (18-102)||(6432596-6432680)
[»] scaffold0831 (1 HSPs)
scaffold0831 (8-112)||(1294-1398)
[»] chr5 (5 HSPs)
chr5 (36-93)||(42414011-42414068)
chr5 (36-182)||(42840418-42840564)
chr5 (23-82)||(30651574-30651633)
chr5 (23-82)||(31777920-31777979)
chr5 (36-93)||(42411840-42411897)
[»] chr2 (1 HSPs)
chr2 (21-82)||(7428986-7429047)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 44186099 - 44186288
Alignment:
Q  8 gtaaagacagcttcttttcacatatatgttttgggagaatttggtgttagagaatcatggactaaactctttattgtcggacccttgcctagcgtggagt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44186099 gtaaagacagcttcttttcacatatatgttttgggagaatttggtgttagagaatcatggactaaactctttattgtcggacccttgcctagcgtggagt 44186198  T
Q  108 gtcctgttggagaaggnnnnnnngttgatatattctttataaaaaatgacaatgaaatagcttgttttgatttaaatactcaaacaattg 197  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44186199 gtcctgttggagaaggaaaaaaagttgatatattctttataaaaaatgacaatgaaatagcttgttttgatttaaatactcaaacaattg 44186288  T

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Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 4877791 - 4877965
Alignment:
Q  8 gtaaagacagcttcttttcacatatatgttttgggagaatttggtgttagagaatcatggactaaactctttattgtcggacccttgcctagcgtggagt 107  Q
    ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  4877791 gtaaagacaacttcttttcacatatatgttttgggcgaacttggtgttagagaatcatggactaaactctttattatcggacccttgcctagcgtggagc 4877890  T
Q  108 gtcctgttggagaaggnnnnnnngttgatatattctttataaaaaatgacaatgaaatagcttgttttgatttaa 182  Q
    |||||||||||| |||       | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4877891 gtcctgttggagcaggaaaaaaaggtgatatattctttataaaaaatgacaatgaaatagcttgttttgatttaa 4877965  T

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Target: chr4; HSP #3
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 1327252 - 1327441
Alignment:
Q  8 gtaaagacagcttcttttcacatatatgttttgggagaatttggtgttagagaatcatggactaaactctttattgtcggacccttgcctagcgtggagt 107  Q
    ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||     
T  1327252 gtaaagacatcttcttttcacatatatgttttgggcgaacttggtgttagagaatcatggactaaactcttcattgtcggacccttgcctggcgtggagc 1327351  T
Q  108 gtcctgttggagaaggnnnnnnngttgatatattctttataaaaaatgacaatgaaatagcttgttttgatttaaatactcaaacaattg 197  Q
    ||||| |||||| |||       |  |||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  1327352 gtcctattggagcaggaaaaaaaggcgatatattctttctaaaaaatgacaatgaagtagcttgttttgatttaaatacccaaacaattg 1327441  T

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Target: chr8 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 26532336 - 26532426
Alignment:
Q  8 gtaaagacagcttcttttcacatatatgttttgggagaatttggtgttagagaatcatggactaaactctttattgtcggacccttgccta 98  Q
    |||||||||||  |||||||||||||||||||||| |||  ||||  |||||||||||||||||||||||| || ||||||||||||||||    
T  26532336 gtaaagacagcagcttttcacatatatgttttgggtgaacctggtcatagagaatcatggactaaactcttcatagtcggacccttgccta 26532426  T

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Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 6432596 - 6432680
Alignment:
Q  18 cttcttttcacatatatgttttgggagaatttggtgttagagaatcatggactaaactctttattgtcggacccttgcctagcgt 102  Q
    ||||||||||||||||||||||| | ||| ||||||| | |||||||||||| |||||||| |||||||||||||| ||||||||    
T  6432596 cttcttttcacatatatgttttgtgtgaacttggtgtcaaagaatcatggaccaaactcttcattgtcggacccttacctagcgt 6432680  T

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Target: scaffold0831 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 1398 - 1294
Alignment:
Q  8 gtaaagacagcttcttttcacatatatgttttgggagaatttggtgttagagaatcatggactaaactctttattgtcggacccttgcctagcgtggagt 107  Q
    ||||||||| ||| ||||||||||||||||||||| |||  ||| ||||| ||||| ||||| |||||||| ||||| || || |||||||| || |||     
T  1398 gtaaagacaacttattttcacatatatgttttgggtgaacctggcgttagtgaatcgtggacaaaactcttcattgttggccctttgcctagtgttgagc 1299  T
Q  108 gtcct 112  Q
    |||||    
T  1298 gtcct 1294  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 42414011 - 42414068
Alignment:
Q  36 ttttgggagaatttggtgttagagaatcatggactaaactctttattgtcggaccctt 93  Q
    ||||||| ||||||||||| |  || ||||||||||||||||||||||| ||||||||    
T  42414011 ttttgggcgaatttggtgtaaaggagtcatggactaaactctttattgttggaccctt 42414068  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 182
Target Start/End: Complemental strand, 42840564 - 42840418
Alignment:
Q  36 ttttgggagaatttggtgttagagaatcatggactaaactctttattgtcggacccttgcctagcgtggagtgtcctgttggagaaggnnnnnnngttga 135  Q
    ||||||| ||| ||||||| | |||||||||||||||| |||||||||| || ||||| ||| || | |||| |||  |||||| |||       |   |    
T  42840564 ttttgggtgaacttggtgtaaaagaatcatggactaaagtctttattgttggtcccttaccttgccttgagtatccaattggagcagggaagaagggcaa 42840465  T
Q  136 tatattctttataaaaaatgacaatgaaatagcttgttttgatttaa 182  Q
    ||||||  |||||||||| ||||||||| ||||||| ||||||||||    
T  42840464 tatattgattataaaaaaagacaatgaactagcttggtttgatttaa 42840418  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 30651574 - 30651633
Alignment:
Q  23 tttcacatatatgttttgggagaatttggtgttagagaatcatggactaaactctttatt 82  Q
    ||||||||||  ||||| || ||| ||||||| || ||||||||||||||||||||||||    
T  30651574 tttcacatatcagttttaggtgaacttggtgtgagtgaatcatggactaaactctttatt 30651633  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 31777920 - 31777979
Alignment:
Q  23 tttcacatatatgttttgggagaatttggtgttagagaatcatggactaaactctttatt 82  Q
    ||||||||||  ||||| || ||| ||||||| || ||||||||||||||||||||||||    
T  31777920 tttcacatatcagttttaggtgaacttggtgtgagtgaatcatggactaaactctttatt 31777979  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 42411840 - 42411897
Alignment:
Q  36 ttttgggagaatttggtgttagagaatcatggactaaactctttattgtcggaccctt 93  Q
    ||||||||||| ||||  | | ||||||||||||||||||||| |||||||| |||||    
T  42411840 ttttgggagaaattggaataaaagaatcatggactaaactcttcattgtcgggccctt 42411897  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 7429047 - 7428986
Alignment:
Q  21 cttttcacatatatgttttgggagaatttggtgttagagaatcatggactaaactctttatt 82  Q
    ||||||||||||  |||||||| ||| | ||||| |||| |||||||||||||||| |||||    
T  7429047 cttttcacatatcagttttgggtgaaatcggtgtgagaggatcatggactaaactcattatt 7428986  T

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