View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO6142A-LTR4-TNT-insertion-5 (Length: 401)

Name: SO6142A-LTR4-TNT-insertion-5
Description: SO6142A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO6142A-LTR4-TNT-insertion-5
SO6142A-LTR4-TNT-insertion-5
[»] chr7 (21 HSPs)
chr7 (8-392)||(1551457-1551841)
chr7 (232-392)||(1087826-1087986)
chr7 (269-387)||(1105159-1105277)
chr7 (269-387)||(1603579-1603697)
chr7 (205-387)||(2320211-2320393)
chr7 (314-392)||(1087682-1087760)
chr7 (258-379)||(1595263-1595384)
chr7 (309-387)||(1542497-1542575)
chr7 (275-379)||(1607281-1607385)
chr7 (233-387)||(1542277-1542431)
chr7 (258-384)||(3956438-3956564)
chr7 (258-388)||(3852291-3852422)
chr7 (295-381)||(1558205-1558291)
chr7 (102-178)||(2336853-2336929)
chr7 (309-388)||(2328432-2328511)
chr7 (8-66)||(1088008-1088066)
chr7 (78-178)||(2328930-2329030)
chr7 (310-373)||(1105011-1105074)
chr7 (8-42)||(2329111-2329145)
chr7 (309-373)||(1595128-1595192)
chr7 (8-48)||(1595450-1595490)
[»] chr8 (8 HSPs)
chr8 (232-387)||(18740086-18740241)
chr8 (232-387)||(18745050-18745205)
chr8 (181-387)||(18724389-18724595)
chr8 (263-387)||(18750123-18750247)
chr8 (310-384)||(18740326-18740400)
chr8 (310-384)||(18745290-18745364)
chr8 (9-50)||(18749887-18749928)
chr8 (9-51)||(18724235-18724277)
[»] scaffold0491 (4 HSPs)
scaffold0491 (181-387)||(6882-7088)
scaffold0491 (232-387)||(1965-2119)
scaffold0491 (310-384)||(2204-2278)
scaffold0491 (9-51)||(6728-6770)
[»] chr3 (1 HSPs)
chr3 (7-49)||(29748398-29748440)


Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 392
Target Start/End: Original strand, 1551457 - 1551841
Alignment:
Q  8 gatttcaccactaatgaggttgtaactgaggtcaatggaagttttgtaatttgtcaatgtnnnnnnntcggaaggaaggtaaccaatgagtgagttgtga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  1551457 gatttcaccactaatgaggttgtaactgaggtcaatggaagttttgtaatttgtcaatgtaaaaaaatcggaaggaaggtaaccaatgagtgagttgtga 1551556  T
Q  108 gaaatgtcaagggtttctaatagagggatatttgttaaggaaattggaaaggttcctccgatggagttgttttttaacatcaacacttgcaactttttta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1551557 gaaatgtcaagggtttctaatagagggatatttgttaaggaaattggaaaggttcctccgatggagttgttttttaacatcaacacttgcaactttttta 1551656  T
Q  208 attgaccgaagttaggtggaaggatacctgtgagaaaattatatgcaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttcc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1551657 attgaccgaagttaggtggaaggatacctgtgagaaaattatatgcaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttcc 1551756  T
Q  308 attgagtctattgtgagatagatttaatgtagtgatatttttcaagaacactaactcaagaggaatggaaccttgaatgtaattg 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1551757 attgagtctattgtgagatagatttaatgtagtgatatttttcaagaacactaactcaagaggaatggaaccttgaatgtaattg 1551841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 232 - 392
Target Start/End: Complemental strand, 1087986 - 1087826
Alignment:
Q  232 tacctgtgagaaaattatatgcaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagatt 331  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |    
T  1087986 tacctgtgagaaaattatatgaaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccgttaagtctattgtgagatagaat 1087887  T
Q  332 taatgtagtgatatttttcaagaacactaactcaagaggaatggaaccttgaatgtaattg 392  Q
    |||||||||||||||||||||||||   ||||||||||||| |||||||||||||| ||||    
T  1087886 taatgtagtgatatttttcaagaacttcaactcaagaggaacggaaccttgaatgttattg 1087826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 269 - 387
Target Start/End: Complemental strand, 1105277 - 1105159
Alignment:
Q  269 taattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagatttaatgtagtgatatttttcaagaacactaactcaaga 368  Q
    ||||| ||| ||||||| || | ||||||| ||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||||| | |||||||||    
T  1105277 taattgtgtaagatttgaaacaaaaataggaaagtttccattgagtctattgtgagatagatctaatatagtgagattcttcaagaaccccaactcaaga 1105178  T
Q  369 ggaatggaaccttgaatgt 387  Q
    |||||||||||||||||||    
T  1105177 ggaatggaaccttgaatgt 1105159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 269 - 387
Target Start/End: Complemental strand, 1603697 - 1603579
Alignment:
Q  269 taattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagatttaatgtagtgatatttttcaagaacactaactcaaga 368  Q
    ||||| ||| ||||||| |||| ||||||||| ||| ||||| ||||||||||||||||||| ||||| || || || || ||||||| | |||||||||    
T  1603697 taattgtgtaagatttgaaagaaaaataggcaggttaccattaagtctattgtgagatagatctaatgaagagagatattccaagaaccccaactcaaga 1603598  T
Q  369 ggaatggaaccttgaatgt 387  Q
    |||||||||||||||||||    
T  1603597 ggaatggaaccttgaatgt 1603579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 205 - 387
Target Start/End: Complemental strand, 2320393 - 2320211
Alignment:
Q  205 ttaattgaccgaagttaggtggaaggatacctgtgagaaaattatatgcaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtt 304  Q
    |||||| ||||||||||| ||| ||   ||| ||||||||||| | ||  || |||| ||||| |||||  |||||||  |||||||||||||| |||||    
T  2320393 ttaatttaccgaagttagatgggagaccaccagtgagaaaattgtttgagatgtcaaggtatagtaattgggtgagatcagtaagagaaataggaaagtt 2320294  T
Q  305 tccattgagtctattgtgagatagatttaatgtagtgatatttttcaagaacactaactcaagaggaatggaaccttgaatgt 387  Q
    |||||||||||| |||| |||||||| |||||| || |||||||||| |||  | |||||| | |||||||| ||||||||||    
T  2320293 tccattgagtctgttgtcagatagatgtaatgtcgttatatttttcaggaaacccaactcatgtggaatggatccttgaatgt 2320211  T

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Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 314 - 392
Target Start/End: Complemental strand, 1087760 - 1087682
Alignment:
Q  314 tctattgtgagatagatttaatgtagtgatatttttcaagaacactaactcaagaggaatggaaccttgaatgtaattg 392  Q
    |||||| | |||||||| |||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1087760 tctattattagatagatctaatctagtgagatttttcaagaaccctaactcaagaggaatggaaccttgaatgtaattg 1087682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 258 - 379
Target Start/End: Complemental strand, 1595384 - 1595263
Alignment:
Q  258 tcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagatttaatgtagtgatatttttcaagaaca 357  Q
    |||| |||| |||||||||| ||||||| |||| ||||||||| ||||||||| ||||||||||||||||||| |||||||  || ||||| ||||||      
T  1595384 tcaaggtattctaattttgtaagatttgaaagaaaaataggcaggtttccattaagtctattgtgagatagatctaatgtatagagattttccaagaatc 1595285  T
Q  358 ctaactcaagaggaatggaacc 379  Q
    | || ||| |||||||||||||    
T  1595284 ccaattcatgaggaatggaacc 1595263  T

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Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 309 - 387
Target Start/End: Original strand, 1542497 - 1542575
Alignment:
Q  309 ttgagtctattgtgagatagatttaatgtagtgatatttttcaagaacactaactcaagaggaatggaaccttgaatgt 387  Q
    |||| |||||||| |||||||| |||| |||||| ||||||||||||| | ||||||||||||||||||||||||||||    
T  1542497 ttgaatctattgtaagatagatctaatatagtgagatttttcaagaaccccaactcaagaggaatggaaccttgaatgt 1542575  T

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Target: chr7; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 379
Target Start/End: Complemental strand, 1607385 - 1607281
Alignment:
Q  275 tgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagatttaatgtagtgatatttttcaagaacactaactcaagaggaatg 374  Q
    |||||| ||||||||  | ||||||||||||  ||||| |||||||| |||||||| |||| |||||| ||||||||||||| | |||||| ||||||||    
T  1607385 tgtgaggtttgtaaggaatataggcaagtttatattgaatctattgttagatagatctaatttagtgagatttttcaagaaccccaactcatgaggaatg 1607286  T
Q  375 gaacc 379  Q
    |||||    
T  1607285 gaacc 1607281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 387
Target Start/End: Original strand, 1542277 - 1542431
Alignment:
Q  233 acctgtgagaaaattatatgcaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagattt 332  Q
    |||| |||| |||||||  | ||| |||| |||| |||||| ||| ||||||| |||| ||||||| | ||||||||| ||||||||||||||||||| |    
T  1542277 acctatgaggaaattatgggaaatgtcaaggtattctaattgtgtaagatttgaaagaaaaataggtaggtttccattaagtctattgtgagatagatct 1542376  T
Q  333 aatgtagtgatatttttcaagaacactaactcaagaggaatggaaccttgaatgt 387  Q
    |||||  ||| | ||||||||||    | |||| ||||||| |||||||||||||    
T  1542377 aatgtgctgagaattttcaagaatctcagctcatgaggaatagaaccttgaatgt 1542431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 384
Target Start/End: Original strand, 3956438 - 3956564
Alignment:
Q  258 tcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagatttaatgtagtgatatttttcaagaaca 357  Q
    |||||||||  ||||| |||||||||||||||  ||||||||||||||| | | ||||  ||||| |||| || || | |   || ||| |||||||||     
T  3956438 tcaatgtattgtaattgtgtgagatttgtaaggaaaataggcaagtttctacttagtcggttgtgcgataaatctattttttggagattattcaagaacc 3956537  T
Q  358 ctaactcaagaggaatggaaccttgaa 384  Q
    |||||||||||||||||||||||||||    
T  3956538 ctaactcaagaggaatggaaccttgaa 3956564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 388
Target Start/End: Complemental strand, 3852422 - 3852291
Alignment:
Q  258 tcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagatttaatgtagtgatattt-ttcaagaac 356  Q
    |||||||||  ||||| ||||||||||||||| |||||||||||||||| |  ||| |  || |||||||||| | || |  | | || | |||||||||    
T  3852422 tcaatgtattgtaattgtgtgagatttgtaagggaaataggcaagtttctaccgagacggttatgagatagatctcatttttttagatatattcaagaac 3852323  T
Q  357 actaactcaagaggaatggaaccttgaatgta 388  Q
     ||||||||||||||||| |||||||||||||    
T  3852322 cctaactcaagaggaatgaaaccttgaatgta 3852291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 381
Target Start/End: Original strand, 1558205 - 1558291
Alignment:
Q  295 taggcaagtttccattgagtctattgtgagatagatttaatgtagtgatatttttcaagaacactaactcaagaggaatggaacctt 381  Q
    |||||| ||| ||||| ||||||||||||||||||| ||||| || || || || ||||||| | |||||| |||||||||||||||    
T  1558205 taggcaggttaccattaagtctattgtgagatagatctaatgaagagagatattccaagaaccccaactcatgaggaatggaacctt 1558291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 2336929 - 2336853
Alignment:
Q  102 ttgtgagaaatgtcaagggtttctaatagagggatatttgttaaggaaattggaaaggttcctccgatggagttgtt 178  Q
    ||||| |||||||||||||||| |||| ||| || ||||||||| ||||||||| |||| || || |||||||||||    
T  2336929 ttgtgggaaatgtcaagggtttgtaattgagagagatttgttaaagaaattggataggtcccaccaatggagttgtt 2336853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 388
Target Start/End: Complemental strand, 2328511 - 2328432
Alignment:
Q  309 ttgagtctattgtgagatagatttaatgtagtgatatttttcaagaacactaactcaagaggaatggaaccttgaatgta 388  Q
    |||| |||||| | ||||| || |||| |||||| |||||||| |||| |||| ||||| ||||||||||||||||||||    
T  2328511 ttgattctattcttagataaatctaatctagtgagatttttcaggaaccctaattcaagtggaatggaaccttgaatgta 2328432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 1088066 - 1088008
Alignment:
Q  8 gatttcaccactaatgaggttgtaactgaggtcaatggaagttttgtaatttgtcaatg 66  Q
    ||||||||||||||||| |||| |||| |||||||||||||||| | ||||||| ||||    
T  1088066 gatttcaccactaatgaagttgcaacttaggtcaatggaagtttcgaaatttgttaatg 1088008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 2329030 - 2328930
Alignment:
Q  78 gaaggaaggtaaccaatgagtgagttgtgagaaatgtcaagggtttctaatagagggatatttgttaaggaaattggaaaggttcctccgatggagttgt 177  Q
    |||||||||  ||||| |||| | ||||  ||||||||||||| || |||  ||| || ||||||||| |||||||||||||| || || ||||||||||    
T  2329030 gaaggaagggtaccaaggagtaaattgtcggaaatgtcaagggcttgtaactgagagagatttgttaaagaaattggaaaggtcccaccaatggagttgt 2328931  T
Q  178 t 178  Q
    |    
T  2328930 t 2328930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 1105074 - 1105011
Alignment:
Q  310 tgagtctattgtgagatagatttaatgtagtgatatttttcaagaacactaactcaagaggaat 373  Q
    |||||||||||| ||||||||  |||||| | |||||||||| |||||| ||||||| ||||||    
T  1105074 tgagtctattgttagatagatcaaatgtaatcatatttttcaggaacaccaactcaaaaggaat 1105011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 2329145 - 2329111
Alignment:
Q  8 gatttcaccactaatgaggttgtaactgaggtcaa 42  Q
    ||||||||||| |||||||||||||||||||||||    
T  2329145 gatttcaccaccaatgaggttgtaactgaggtcaa 2329111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 1595192 - 1595128
Alignment:
Q  309 ttgagtctattgtgagatagatttaatgtagtgatatttttcaagaacactaactcaagaggaat 373  Q
    |||| |||||||| ||||||||||| |||| ||| |||||||| |||| | ||||||| ||||||    
T  1595192 ttgaatctattgttagatagatttagtgtaatgagatttttcaggaaccccaactcaaaaggaat 1595128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 1595490 - 1595450
Alignment:
Q  8 gatttcaccactaatgaggttgtaactgaggtcaatggaag 48  Q
    |||||||||| |||||||||||| ||||||||| |||||||    
T  1595490 gatttcaccattaatgaggttgtgactgaggtccatggaag 1595450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 232 - 387
Target Start/End: Original strand, 18740086 - 18740241
Alignment:
Q  232 tacctgtgagaaaattatatgcaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagatt 331  Q
    ||||| |||| ||||||||||  || |||| |||  |||||| ||| |||||||||||| || ||||||||||||||||||||||||||||||||||||     
T  18740086 tacctatgagtaaattatatgagatgtcaaggtaatctaattgtgtaagatttgtaagaaaattaggcaagtttccattgagtctattgtgagatagatc 18740185  T
Q  332 taatgtagtgatatttttcaagaacactaactcaagaggaatggaaccttgaatgt 387  Q
    ||||||  |||||||| | | |||| | ||||||||||||||||||||||||||||    
T  18740186 taatgtgatgatatttctgaggaaccccaactcaagaggaatggaaccttgaatgt 18740241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 232 - 387
Target Start/End: Original strand, 18745050 - 18745205
Alignment:
Q  232 tacctgtgagaaaattatatgcaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagatt 331  Q
    ||||| |||| ||||||||||  || |||| |||  |||||| ||| |||||||||||| || ||||||||||||||||||||||||||||||||||||     
T  18745050 tacctatgagtaaattatatgagatgtcaaggtaatctaattgtgtaagatttgtaagaaaattaggcaagtttccattgagtctattgtgagatagatc 18745149  T
Q  332 taatgtagtgatatttttcaagaacactaactcaagaggaatggaaccttgaatgt 387  Q
    ||||||  |||||||| | | |||| | ||||||||||||||||||||||||||||    
T  18745150 taatgtgatgatatttctgaggaaccccaactcaagaggaatggaaccttgaatgt 18745205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 181 - 387
Target Start/End: Original strand, 18724389 - 18724595
Alignment:
Q  181 ttaacatcaacacttgcaacttttttaattgaccgaagttaggtggaaggatacctgtgagaaaattatatgcaatatcaatgtatactaattttgtgag 280  Q
    |||||| ||| |||||||| ||  |||||||| | ||||||  |||||||| ||| |||| |||||||||||     | || ||||| ||||| ||||||    
T  18724389 ttaacaacaaaacttgcaatttggttaattgatcaaagttatatggaaggaaaccagtgaaaaaattatatgagcagttaaggtatattaattgtgtgag 18724488  T
Q  281 atttgtaagagaaataggcaagtttccattgagtctattgtgagatagatttaatgtagtgatatttttcaagaacactaactcaagaggaatggaacct 380  Q
    |||| ||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||||  ||| | ||||||| ||||| | |||||    
T  18724489 atttttaagagaaataggcaggtttccattgagtctattgtgagacagatctaatgtagtgagatttttcagtaaccccaactcaaaaggaaggaaacct 18724588  T
Q  381 tgaatgt 387  Q
    |||||||    
T  18724589 tgaatgt 18724595  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 263 - 387
Target Start/End: Original strand, 18750123 - 18750247
Alignment:
Q  263 gtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagatttaatgtagtgatatttttcaagaacactaac 362  Q
    ||||| ||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||||  ||| | |||    
T  18750123 gtatattaattgtgtgagatttttaagagaaataggcaggtttccattgagtctattgtgagacagatctaatgtagtgagatttttcagtaaccccaac 18750222  T
Q  363 tcaagaggaatggaaccttgaatgt 387  Q
    |||| ||||| | ||||||||||||    
T  18750223 tcaaaaggaaggaaaccttgaatgt 18750247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 18740326 - 18740400
Alignment:
Q  310 tgagtctattgtgagatagatttaatgtagtgatatttttcaagaacactaactcaagaggaatggaaccttgaa 384  Q
    |||||||||||||||||||||  |||||| |||||||||||| |||||| ||||||| ||||||| |||||||||    
T  18740326 tgagtctattgtgagatagatcaaatgtaatgatatttttcaggaacaccaactcaaaaggaatgaaaccttgaa 18740400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 18745290 - 18745364
Alignment:
Q  310 tgagtctattgtgagatagatttaatgtagtgatatttttcaagaacactaactcaagaggaatggaaccttgaa 384  Q
    |||||||||||||||||||||  |||||| |||||||||||| |||||| ||||||| ||||||| |||||||||    
T  18745290 tgagtctattgtgagatagatcaaatgtaatgatatttttcaggaacaccaactcaaaaggaatgaaaccttgaa 18745364  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 18749887 - 18749928
Alignment:
Q  9 atttcaccactaatgaggttgtaactgaggtcaatggaagtt 50  Q
    |||||||||||||||||||||| ||||||||| |||||||||    
T  18749887 atttcaccactaatgaggttgtgactgaggtccatggaagtt 18749928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 18724235 - 18724277
Alignment:
Q  9 atttcaccactaatgaggttgtaactgaggtcaatggaagttt 51  Q
    ||||||||||||||| |||||| ||||||||| ||||||||||    
T  18724235 atttcaccactaatgtggttgtgactgaggtccatggaagttt 18724277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 181 - 387
Target Start/End: Original strand, 6882 - 7088
Alignment:
Q  181 ttaacatcaacacttgcaacttttttaattgaccgaagttaggtggaaggatacctgtgagaaaattatatgcaatatcaatgtatactaattttgtgag 280  Q
    |||||| ||| |||||||| ||  |||||||| | ||||||  |||||||| ||| |||| |||||||||||     | || ||||| ||||| ||||||    
T  6882 ttaacaacaaaacttgcaatttggttaattgatcaaagttatatggaaggaaaccagtgaaaaaattatatgagcagttaaggtatattaattgtgtgag 6981  T
Q  281 atttgtaagagaaataggcaagtttccattgagtctattgtgagatagatttaatgtagtgatatttttcaagaacactaactcaagaggaatggaacct 380  Q
    |||| ||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||||  ||| | ||||||| ||||| | |||||    
T  6982 atttttaagagaaataggcaggtttccattgagtctattgtgagacagatctaatgtagtgagatttttcagtaaccccaactcaaaaggaaggaaacct 7081  T
Q  381 tgaatgt 387  Q
    |||||||    
T  7082 tgaatgt 7088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 232 - 387
Target Start/End: Original strand, 1965 - 2119
Alignment:
Q  232 tacctgtgagaaaattatatgcaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagatt 331  Q
    ||||| |||| ||||||||||  || |||| |||  |||||| ||| |||||||||||| || ||||||||||||||||||||||||||||||||||||     
T  1965 tacctatgagtaaattatatgagatgtcaaggtaatctaattgtgtaagatttgtaaga-aattaggcaagtttccattgagtctattgtgagatagatc 2063  T
Q  332 taatgtagtgatatttttcaagaacactaactcaagaggaatggaaccttgaatgt 387  Q
    ||||||  |||||||| | | |||| | ||||||||||||||||||||||||||||    
T  2064 taatgtgatgatatttctgaggaaccccaactcaagaggaatggaaccttgaatgt 2119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 2204 - 2278
Alignment:
Q  310 tgagtctattgtgagatagatttaatgtagtgatatttttcaagaacactaactcaagaggaatggaaccttgaa 384  Q
    |||||||||||||||||||||  |||||| |||||||||||| |||||| ||||||| ||||||| |||||||||    
T  2204 tgagtctattgtgagatagatcaaatgtaatgatatttttcaggaacaccaactcaaaaggaatgaaaccttgaa 2278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 6728 - 6770
Alignment:
Q  9 atttcaccactaatgaggttgtaactgaggtcaatggaagttt 51  Q
    ||||||||||||||| |||||| ||||||||| ||||||||||    
T  6728 atttcaccactaatgtggttgtgactgaggtccatggaagttt 6770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 29748440 - 29748398
Alignment:
Q  7 agatttcaccactaatgaggttgtaactgaggtcaatggaagt 49  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  29748440 agatttcaccactaatgaggttgtgactgaggtctatggaagt 29748398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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