View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO6142A-LTR4-TNT-insertion-6 (Length: 157)

Name: SO6142A-LTR4-TNT-insertion-6
Description: SO6142A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO6142A-LTR4-TNT-insertion-6
SO6142A-LTR4-TNT-insertion-6
[»] chr8 (11 HSPs)
chr8 (45-148)||(273524-273627)
chr8 (45-148)||(642222-642325)
chr8 (45-148)||(828028-828131)
chr8 (45-145)||(20480699-20480799)
chr8 (90-148)||(16406143-16406201)
chr8 (90-148)||(19994228-19994286)
chr8 (90-148)||(43374663-43374721)
chr8 (69-147)||(20568321-20568399)
chr8 (69-147)||(20574514-20574592)
chr8 (66-135)||(25121580-25121648)
chr8 (65-125)||(22322486-22322546)
[»] scaffold0037 (2 HSPs)
scaffold0037 (45-148)||(25758-25861)
scaffold0037 (69-148)||(93723-93802)
[»] scaffold0021 (2 HSPs)
scaffold0021 (45-148)||(87452-87555)
scaffold0021 (65-148)||(137866-137949)
[»] chr7 (10 HSPs)
chr7 (45-148)||(112330-112433)
chr7 (45-148)||(3894121-3894224)
chr7 (44-148)||(12544747-12544851)
chr7 (65-148)||(35093838-35093921)
chr7 (90-148)||(36051685-36051743)
chr7 (69-125)||(45453317-45453373)
chr7 (65-120)||(12753934-12753989)
chr7 (69-148)||(15926392-15926471)
chr7 (90-148)||(142656-142714)
chr7 (90-148)||(2027690-2027748)
[»] chr6 (10 HSPs)
chr6 (45-148)||(18776239-18776342)
chr6 (45-120)||(18569644-18569719)
chr6 (47-148)||(25645862-25645963)
chr6 (90-148)||(25745409-25745467)
chr6 (65-125)||(32897775-32897835)
chr6 (69-148)||(16105587-16105665)
chr6 (69-148)||(16085107-16085185)
chr6 (69-148)||(18003921-18004000)
chr6 (71-122)||(18582341-18582392)
chr6 (89-148)||(22431277-22431335)
[»] chr2 (8 HSPs)
chr2 (49-148)||(36891747-36891846)
chr2 (70-148)||(8887160-8887237)
chr2 (90-147)||(22862508-22862565)
chr2 (65-148)||(6878469-6878552)
chr2 (69-148)||(28973066-28973145)
chr2 (69-148)||(3799955-3800034)
chr2 (69-148)||(42179315-42179394)
chr2 (69-120)||(270207-270258)
[»] scaffold0447 (2 HSPs)
scaffold0447 (48-148)||(3650-3750)
scaffold0447 (48-148)||(8264-8364)
[»] scaffold0383 (1 HSPs)
scaffold0383 (48-148)||(6258-6358)
[»] chr5 (6 HSPs)
chr5 (45-148)||(20711162-20711265)
chr5 (92-148)||(24474602-24474658)
chr5 (90-147)||(21652477-21652534)
chr5 (92-148)||(4864292-4864347)
chr5 (65-120)||(24184264-24184319)
chr5 (65-148)||(28258626-28258708)
[»] chr1 (7 HSPs)
chr1 (45-146)||(18506379-18506480)
chr1 (47-148)||(35053864-35053965)
chr1 (65-148)||(9785310-9785392)
chr1 (90-148)||(41211067-41211125)
chr1 (65-125)||(22407253-22407313)
chr1 (90-148)||(5675684-5675742)
chr1 (69-147)||(35523481-35523559)
[»] scaffold0234 (1 HSPs)
scaffold0234 (45-148)||(18459-18562)
[»] scaffold0025 (1 HSPs)
scaffold0025 (45-148)||(145705-145808)
[»] chr3 (10 HSPs)
chr3 (90-148)||(318689-318747)
chr3 (65-124)||(6147896-6147955)
chr3 (90-148)||(16183087-16183145)
chr3 (69-125)||(17523525-17523581)
chr3 (69-148)||(14297522-14297601)
chr3 (69-148)||(14303149-14303228)
chr3 (69-148)||(53899576-53899655)
chr3 (65-146)||(35122714-35122794)
chr3 (65-112)||(6155480-6155527)
chr3 (47-122)||(11062069-11062144)
[»] chr4 (10 HSPs)
chr4 (71-148)||(45460015-45460092)
chr4 (85-148)||(8873620-8873683)
chr4 (93-148)||(44345850-44345905)
chr4 (65-125)||(44054968-44055028)
chr4 (90-148)||(53908887-53908945)
chr4 (65-119)||(821166-821220)
chr4 (90-148)||(10643206-10643264)
chr4 (90-148)||(53705888-53705946)
chr4 (72-148)||(21960628-21960704)
chr4 (69-148)||(7133398-7133477)
[»] scaffold0138 (1 HSPs)
scaffold0138 (92-148)||(14346-14402)
[»] scaffold0359 (1 HSPs)
scaffold0359 (65-123)||(373-431)
[»] scaffold0244 (2 HSPs)
scaffold0244 (91-148)||(23898-23955)
scaffold0244 (90-148)||(17478-17536)
[»] scaffold0011 (2 HSPs)
scaffold0011 (65-146)||(262568-262649)
scaffold0011 (65-148)||(255962-256045)
[»] scaffold0622 (1 HSPs)
scaffold0622 (70-148)||(8458-8536)
[»] scaffold0083 (1 HSPs)
scaffold0083 (90-148)||(13223-13281)
[»] scaffold0407 (1 HSPs)
scaffold0407 (103-148)||(5700-5745)
[»] scaffold0750 (1 HSPs)
scaffold0750 (69-148)||(5482-5561)
[»] scaffold0091 (1 HSPs)
scaffold0091 (98-148)||(43045-43095)
[»] scaffold0068 (2 HSPs)
scaffold0068 (90-148)||(47151-47209)
scaffold0068 (90-148)||(60599-60657)
[»] scaffold0303 (1 HSPs)
scaffold0303 (69-142)||(1426-1499)
[»] scaffold0120 (1 HSPs)
scaffold0120 (85-148)||(18358-18421)
[»] scaffold0034 (2 HSPs)
scaffold0034 (69-148)||(44824-44902)
scaffold0034 (69-148)||(39341-39419)
[»] scaffold0195 (2 HSPs)
scaffold0195 (90-148)||(18328-18386)
scaffold0195 (90-148)||(20412-20470)
[»] scaffold0480 (1 HSPs)
scaffold0480 (65-125)||(6414-6474)
[»] scaffold0012 (1 HSPs)
scaffold0012 (90-142)||(248620-248672)
[»] scaffold0018 (2 HSPs)
scaffold0018 (76-119)||(52341-52384)
scaffold0018 (76-119)||(56293-56336)
[»] scaffold0009 (1 HSPs)
scaffold0009 (85-148)||(237209-237272)


Alignment Details
Target: chr8 (Bit Score: 104; Significance: 4e-52; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 4e-52
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 273627 - 273524
Alignment:
Q  45 aggggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaacca 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  273627 aggggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaacca 273528  T
Q  145 attg 148  Q
    ||||    
T  273527 attg 273524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 4e-52
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 642222 - 642325
Alignment:
Q  45 aggggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaacca 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  642222 aggggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaacca 642321  T
Q  145 attg 148  Q
    ||||    
T  642322 attg 642325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 4e-52
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 828028 - 828131
Alignment:
Q  45 aggggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaacca 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  828028 aggggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaacca 828127  T
Q  145 attg 148  Q
    ||||    
T  828128 attg 828131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 5e-36
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 20480799 - 20480699
Alignment:
Q  45 aggggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaacca 144  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||| ||||||||| |||    
T  20480799 aggggtctagtgaatctttgtgtcgttttgtcttgagatttatccatgttggccggtggccacttgatatggtttttggtcggaaatgtttcttgagcca 20480700  T
Q  145 a 145  Q
    |    
T  20480699 a 20480699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 16406143 - 16406201
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  16406143 atgttggccggtggccacatgatatggtttttggtcgaaaacgtttcttgaaccaattg 16406201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 19994228 - 19994286
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||||||||||||||||||||||||||||||||  ||| |||||||||| ||||||    
T  19994228 atgttggccggtggccacttgatatggtttttggtcggaaatgtttcttgaatcaattg 19994286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 43374663 - 43374721
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  43374663 atgttggccggtagccacttgacatggtttttagtcgaaaacgtttcttgaaccaattg 43374721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 20568321 - 20568399
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaatt 147  Q
    ||||||||||| ||| | || |||||||||| |  |||||||| | ||||||||||| |||| ||||||||| ||||||    
T  20568321 gttttgtcttgggatttgtcaatgttggccgtttaccacttgacacggtttttggtcgaaaatgtttcttgagccaatt 20568399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 20574514 - 20574592
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaatt 147  Q
    ||||||||||| ||| | || |||||||||| |  |||||||| | ||||||||||| |||| ||||||||| ||||||    
T  20574514 gttttgtcttgggatttgtcaatgttggccgtttaccacttgacacggtttttggtcgaaaatgtttcttgagccaatt 20574592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 25121648 - 25121580
Alignment:
Q  66 gtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgttt 135  Q
    |||||||||||||| ||| | || ||||||| || | ||||||||||| |||||||||||||||| ||||    
T  25121648 gtcgttttgtcttgggat-tgtcaatgttggtcgtttgccacttgatacggtttttggtcaaaaatgttt 25121580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 22322486 - 22322546
Alignment:
Q  65 tgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtc 125  Q
    ||||||||||  ||| ||| | || ||||||| ||||| ||||||||||||||||||||||    
T  22322486 tgtcgttttgctttgggatttgtcaatgttggtcggtgaccacttgatatggtttttggtc 22322546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 25758 - 25861
Alignment:
Q  45 aggggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaacca 144  Q
    |||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||  ||| ||||||||| |||    
T  25758 aggggtctagtgaatctttgtgtcgttttgtcttgagatttatcaatgttggccggtggccacttgatatggtttttggtcggaaatgtttcttgagcca 25857  T
Q  145 attg 148  Q
    ||||    
T  25858 attg 25861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 93802 - 93723
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||||||| ||  | || ||||||| || | ||||||||| | ||| |||||||||||| ||||| |||||||||||    
T  93802 gttttgtcttgcgaattgtcaatgttggtcgtttgccacttgacacggtctttggtcaaaaatgtttcctgaaccaattg 93723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 87555 - 87452
Alignment:
Q  45 aggggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaacca 144  Q
    |||||||| ||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| |||    
T  87555 aggggtctggtgaatctttgtgtcgttttgtcttgagatttatcaatgttggccggtggccacttgatatggtttttggtcgaaaatgtttcttgagcca 87456  T
Q  145 attg 148  Q
    ||||    
T  87455 attg 87452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 137866 - 137949
Alignment:
Q  65 tgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||| |||||||||| ||| |||| ||||||||||||||| ||| ||||||||||||||||  ||| ||||||||| |||||||    
T  137866 tgtcattttgtcttgggatttatcaatgttggccggtggcaactcgatatggtttttggtcggaaatgtttcttgagccaattg 137949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 2e-35; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 112330 - 112433
Alignment:
Q  45 aggggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaacca 144  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||  ||| ||||||||| |||    
T  112330 aggggtctagtgaatctttgtgtcgttttgtcttgagatttatccatgttggccggtggccacttgatatggtttttgttcggaaatgtttcttgagcca 112429  T
Q  145 attg 148  Q
    ||||    
T  112430 attg 112433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 3894224 - 3894121
Alignment:
Q  45 aggggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaacca 144  Q
    |||| ||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||  ||| ||||||||| |||    
T  3894224 agggctctagtgaatctttgtgtcgttttgtcttgggatttatccatgttggccggtggccacttgatatggtttttggtcggaaatgtttcttgagcca 3894125  T
Q  145 attg 148  Q
    ||||    
T  3894124 attg 3894121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 12544747 - 12544851
Alignment:
Q  44 gaggggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaacc 143  Q
    ||||||||||||| |||||||||| ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||  ||| ||||||||| ||    
T  12544747 gaggggtctagtgaatctttgtgttgttttgtcttgagatttatcaatgttggtcggtggccacttgatatggtttttggtcggaaatgtttcttgagcc 12544846  T
Q  144 aattg 148  Q
    |||||    
T  12544847 aattg 12544851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 35093921 - 35093838
Alignment:
Q  65 tgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||||||||   | | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35093921 tgtcgttttgtcttggagtttgtcaatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 35093838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 36051743 - 36051685
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  36051743 atgttggccggtagccacttgacatggtttttagtcgaaaacgtttcttgaaccaattg 36051685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 45453317 - 45453373
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtc 125  Q
    ||||||||||| ||| |||| ||||||| |||| ||||||||||| |||||||||||    
T  45453317 gttttgtcttgggatttatcaatgttggtcggttgccacttgatacggtttttggtc 45453373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 12753989 - 12753934
Alignment:
Q  65 tgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttt 120  Q
    ||||||||||||||| ||| |||| |||||||||| | ||||||||||||| ||||    
T  12753989 tgtcgttttgtcttgggatttatcaatgttggccgtttgccacttgatatgatttt 12753934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 15926471 - 15926392
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||||||| ||  | || |||||||||| | ||||||||| ||||| ||||||| |||| ||||||||||| |||||    
T  15926471 gttttgtcttgggaattgtcaatgttggccgtttgccacttgacatggtctttggtcgaaaatgtttcttgaactaattg 15926392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 142714 - 142656
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||| | ||||||||| | |||||||||||| ||| ||||||||| |||||||    
T  142714 atgttggccgtttgccacttgacacggtttttggtcagaaatgtttcttgagccaattg 142656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 2027748 - 2027690
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||| | ||||||||| | ||| |||||||||||| ||||||||||| |||||    
T  2027748 atgttggccgtttgccacttgacacggtctttggtcaaaaatgtttcttgaactaattg 2027690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 2e-35; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 18776342 - 18776239
Alignment:
Q  45 aggggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaacca 144  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   ||| ||||||||| |||    
T  18776342 aggggtctagtgaatctttgtgtcgttttgtcttgagatttatccatgttggccggtggccacttgatatggtttttggttggaaatgtttcttgagcca 18776243  T
Q  145 attg 148  Q
    ||||    
T  18776242 attg 18776239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 18569719 - 18569644
Alignment:
Q  45 aggggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttt 120  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||| |||||||||||||||||    
T  18569719 aggggtctagtggatctttgtgtcgttttgtcttgagaattatccatgttgggcggtgaccacttgatatggtttt 18569644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 25645862 - 25645963
Alignment:
Q  47 gggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaat 146  Q
    |||||||||| |||||| ||| ||||||||||||||| |||| ||||||||| |||||||||||||||||| |||||||  ||| ||||||| | |||||    
T  25645862 gggtctagtgaatctttatgttgttttgtcttgagatctatcaatgttggccagtggccacttgatatggtgtttggtcggaaatgtttctttagccaat 25645961  T
Q  147 tg 148  Q
    ||    
T  25645962 tg 25645963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 25745409 - 25745467
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||    
T  25745409 atgttggccgatggccacttgatatggtttttggtcgaaaatgtttcttgaaccaattg 25745467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 32897835 - 32897775
Alignment:
Q  65 tgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtc 125  Q
    |||||| |||||||||||| |||| ||||||| |||| ||||||||||| |||||||||||    
T  32897835 tgtcgtcttgtcttgagatttatcaatgttggtcggttgccacttgatacggtttttggtc 32897775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 16105665 - 16105587
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||||||| ||| |||| |||||||||| | ||||||||||||||  ||||||| |||| ||||||||| |||||||    
T  16105665 gttttgtcttgggatttatcaatgttggccgtttgccacttgatatgg-atttggtcgaaaatgtttcttgagccaattg 16105587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 16085185 - 16085107
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||||||| ||| |||| |||||||||| | ||||| ||||||||  ||||||| |||| ||||||||| |||||||    
T  16085185 gttttgtcttgggatttatcaatgttggccgtttgccacatgatatgg-atttggtcgaaaatgtttcttgagccaattg 16085107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 18003921 - 18004000
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||||||| ||  | || ||||||| || | ||||||||| | ||| ||||||||||||| |||||||||| |||||    
T  18003921 gttttgtcttgggaattgtcaatgttggtcgtttgccacttgacacggtctttggtcaaaaacatttcttgaactaattg 18004000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 18582392 - 18582341
Alignment:
Q  71 tttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttg 122  Q
    ||||||||| ||  |||| |||||||||| | ||||||||||||||||||||    
T  18582392 tttgtcttgggaattatcaatgttggccgtttgccacttgatatggtttttg 18582341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 22431335 - 22431277
Alignment:
Q  89 catgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||| ||||| ||||||||||||| ||||||||  ||| ||||||||| |||||||    
T  22431335 catgttggtcggtgaccacttgatatgg-ttttggtcggaaatgtttcttgagccaattg 22431277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 2e-35; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 36891747 - 36891846
Alignment:
Q  49 gtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||    
T  36891747 gtctagtgaatctttgtgttgttttgtcttgagatttatccatgttggccggtggccacttgatatggtttttggtcgaaaatgtttcttgagccaattg 36891846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 8887237 - 8887160
Alignment:
Q  70 ttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||| ||| | || ||||||| |||| ||||||||| |||||||| | |||||||||||||||||||||||||    
T  8887237 ttttgtcttgggatttgtcaatgttggtcggtagccacttgacatggttttag-tcaaaaacgtttcttgaaccaattg 8887160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 22862565 - 22862508
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaatt 147  Q
    |||||||||||| ||||||||| ||||||||| ||| |||| ||||||||||||||||    
T  22862565 atgttggccggtagccacttgacatggtttttagtcgaaaatgtttcttgaaccaatt 22862508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 6878552 - 6878469
Alignment:
Q  65 tgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||| |||| ||| | || ||||||| ||||| ||||||||||||||||||||||  |||  |||||||| |||||||    
T  6878552 tgtcgttttgccttgggatttgtcaatgttggtcggtgaccacttgatatggtttttggtcggaaatatttcttgagccaattg 6878469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 28973145 - 28973066
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||||  || |||| |||||||||| | ||||||||||| |||||||||||  ||| ||||||||| |||||||    
T  28973145 gttttgtcttggaatttatcaatgttggccgtttgccacttgatacggtttttggtcggaaatgtttcttgagccaattg 28973066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 3799955 - 3800034
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||||||| ||  | || |||||||||| | ||||||||| || || ||||||||||||| |||||||||| |||||    
T  3799955 gttttgtcttgggaattgtcaatgttggccgtttgccacttgacatagtgtttggtcaaaaacatttcttgaactaattg 3800034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 42179315 - 42179394
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||||||| ||  |||| |||||||||| | ||||||||||| ||||||| |||  ||| |||| ||||||||||||    
T  42179315 gttttgtcttgggaattatcaatgttggccgtttgccacttgatacggtttttagtcggaaatgttttttgaaccaattg 42179394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 270258 - 270207
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttt 120  Q
    ||||||||||| ||| |||| ||||||| || | ||||||||||||||||||    
T  270258 gttttgtcttgggatttatcaatgttggtcgtttgccacttgatatggtttt 270207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447 (Bit Score: 69; Significance: 3e-31; HSPs: 2)
Name: scaffold0447
Description:

Target: scaffold0447; HSP #1
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 3750 - 3650
Alignment:
Q  48 ggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaatt 147  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||  ||| ||||||||| ||||||    
T  3750 ggtctagtgaatctttgtgtcgttttgtcttaagatttatccatgttggctggtggccacttgatatggtttttggtcggaaatgtttcttgagccaatt 3651  T
Q  148 g 148  Q
    |    
T  3650 g 3650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447; HSP #2
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 8364 - 8264
Alignment:
Q  48 ggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaatt 147  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||  ||| ||||||||| ||||||    
T  8364 ggtctagtgaatctttgtgtcgttttgtcttaagatttatccatgttggctggtggccacttgatatggtttttggtcggaaatgtttcttgagccaatt 8265  T
Q  148 g 148  Q
    |    
T  8264 g 8264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0383 (Bit Score: 69; Significance: 3e-31; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 6358 - 6258
Alignment:
Q  48 ggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaatt 147  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||  ||| ||||||||| ||||||    
T  6358 ggtctagtgaatctttgtgtcgttttgtcttaagatttatccatgttggctggtggccacttgatatggtttttggtcggaaatgtttcttgagccaatt 6259  T
Q  148 g 148  Q
    |    
T  6258 g 6258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 1e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 20711265 - 20711162
Alignment:
Q  45 aggggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaacca 144  Q
    |||||||||||| |||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||||||||||||||||  ||| ||||||||| |||    
T  20711265 aggggtctagtgaatctttgtgtcgttttatcttgggatttatcaatgttggccggtggccacttgatatggtttttggtcggaaatgtttcttgagcca 20711166  T
Q  145 attg 148  Q
    ||||    
T  20711165 attg 20711162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 24474658 - 24474602
Alignment:
Q  92 gttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24474658 gttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 24474602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 21652477 - 21652534
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaatt 147  Q
    ||||||| |||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  21652477 atgttggtcggtggccacttgatatggtttttggtcgaaaatgttccttgaaccaatt 21652534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 4864347 - 4864292
Alignment:
Q  92 gttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||||||||||||||||||||||||||| |||| | |||||||||||||||    
T  4864347 gttggccggtggccacttgatatggtttttggtcgaaaatg-ttcttgaaccaattg 4864292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 24184264 - 24184319
Alignment:
Q  65 tgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttt 120  Q
    ||||||||||||||| ||| |||| |||||||||| | ||||||||||| ||||||    
T  24184264 tgtcgttttgtcttgggatttatcaatgttggccgtttgccacttgatacggtttt 24184319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 28258708 - 28258626
Alignment:
Q  65 tgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||| ||| |||||| ||| | || ||||||| ||||| ||||||||||||| ||||||||  ||| ||||||||| |||||||    
T  28258708 tgtcttttcgtcttgggatttgtcaatgttggtcggtgaccacttgatatgg-ttttggtcggaaatgtttcttgagccaattg 28258626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 18506480 - 18506379
Alignment:
Q  45 aggggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaacca 144  Q
    |||||||||||| ||||||||||| |||||||||||||| |||| |||||||  |||||||||||||||||||||||||||  ||| |||||||||||||    
T  18506480 aggggtctagtgaatctttgtgtcattttgtcttgagatttatcaatgttggttggtggccacttgatatggtttttggtcggaaatgtttcttgaacca 18506381  T
Q  145 at 146  Q
    ||    
T  18506380 at 18506379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 35053965 - 35053864
Alignment:
Q  47 gggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaat 146  Q
    |||||||||| || ||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||  ||| ||||||||| |||||    
T  35053965 gggtctagtgaatgtttgtgtcgttttgtcttgagatttatccatgttggtcgatggccacttgatatggtttttggtcggaaatgtttcttgagccaat 35053866  T
Q  147 tg 148  Q
    ||    
T  35053865 tg 35053864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 9785310 - 9785392
Alignment:
Q  65 tgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||||||||||| ||  | || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9785310 tgtcgttttgtcttg-gagttgtcaatgttggccggtggccacttgatatggtttttggtaaaaaacgtttcttgaaccaattg 9785392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 41211125 - 41211067
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||    
T  41211125 atgttggccggtggccacttgatatggtttttggtcgaaaatgttttttgaaccaattg 41211067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 22407253 - 22407313
Alignment:
Q  65 tgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtc 125  Q
    ||||||||||||||| ||| |||| ||||||| |||| ||||||||||| |||||||||||    
T  22407253 tgtcgttttgtcttgggatttatcaatgttggtcggttgccacttgatacggtttttggtc 22407313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 5675684 - 5675742
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||| | ||||||||| | |||||||||||  ||| |||||||||||||||||    
T  5675684 atgttggccgtttgccacttgacacggtttttggtcggaaatgtttcttgaaccaattg 5675742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 35523481 - 35523559
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaatt 147  Q
    ||||||||||| ||| ||||  ||||||||| | |||||||||||||||||| | ||  ||| ||||||||| ||||||    
T  35523481 gttttgtcttgggatttatcagtgttggccgtttgccacttgatatggttttggatcggaaatgtttcttgagccaatt 35523559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 18459 - 18562
Alignment:
Q  45 aggggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaacca 144  Q
    |||||||||||  |||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||  ||| ||||||||| |||    
T  18459 aggggtctagtaaatctttgtgtcggtttatcttgagatttatccatgttggccggtggccacttgatatggtttttgatcggaaatgtttcttgagcca 18558  T
Q  145 attg 148  Q
    ||||    
T  18559 attg 18562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 145808 - 145705
Alignment:
Q  45 aggggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaacca 144  Q
    |||| ||||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||  ||| ||||||||| |||    
T  145808 agggatctagtgaatctttgtttcgttttatcttgagatttatccatgttggccggtggccacttgatatggtttttgatcggaaatgtttcttgagcca 145709  T
Q  145 attg 148  Q
    ||||    
T  145708 attg 145705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 6e-23; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 318689 - 318747
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  318689 atgttggccggtggccacttgatatggtttttggtcaaaaatgtttcttgaaccaattg 318747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 9e-19
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 6147896 - 6147955
Alignment:
Q  65 tgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggt 124  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||    
T  6147896 tgtcgttttgtcttgaggtttatcaatgttggccggtggccacttgatatggtttttggt 6147955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 16183087 - 16183145
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||| |||||||||||||||||||||||||||||  ||| |||||||||||||||||    
T  16183087 atgttgtccggtggccacttgatatggtttttggtcggaaatgtttcttgaaccaattg 16183145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 17523525 - 17523581
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtc 125  Q
    ||||||||||| ||| |||| |||||||||| | |||||||||||||||||||||||    
T  17523525 gttttgtcttgggatttatcaatgttggccgtttgccacttgatatggtttttggtc 17523581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 14297601 - 14297522
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||| ||||| ||| |||| |||||||||| | |||||||| ||||||||||||||  ||| ||||||||| |||||||    
T  14297601 gttttatcttgggatttatcaatgttggccgtttgccacttggtatggtttttggtcggaaatgtttcttgagccaattg 14297522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 14303228 - 14303149
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||| ||||| ||| |||| |||||||||| | |||||||| ||||||||||||||  ||| ||||||||| |||||||    
T  14303228 gttttatcttgggatttatcaatgttggccgtttgccacttggtatggtttttggtcggaaatgtttcttgagccaattg 14303149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 53899576 - 53899655
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||||||| | | |||| ||||||| |||| |||||||||||||||||| | ||| ||| ||||||||| |||||||    
T  53899576 gttttgtcttgggttttatcaatgttggtcggttgccacttgatatggttttggatcagaaatgtttcttgagccaattg 53899655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 35122794 - 35122714
Alignment:
Q  65 tgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaat 146  Q
    ||||||||||||||| ||| |||| |||||||||| | ||||||||||| || ||||||||  ||| ||||||||| |||||    
T  35122794 tgtcgttttgtcttgggatttatcaatgttggccgtttgccacttgatacgg-ttttggtcggaaatgtttcttgagccaat 35122714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 6155480 - 6155527
Alignment:
Q  65 tgtcgttttgtcttgagatgtatccatgttggccggtggccacttgat 112  Q
    ||||||||||||||||| | |||| ||||||||| |||||||||||||    
T  6155480 tgtcgttttgtcttgaggtttatcaatgttggccagtggccacttgat 6155527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 11062069 - 11062144
Alignment:
Q  47 gggtctagtggatctttgtgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttg 122  Q
    |||||||||| | |||||||| ||||||||||||||  |||| ||||||| || | ||||||||||| | ||||||    
T  11062069 gggtctagtgaacctttgtgttgttttgtcttgagaattatcaatgttggtcgtttgccacttgatacgttttttg 11062144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 6e-20; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 45460015 - 45460092
Alignment:
Q  71 tttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||  ||| ||||||||| |||||||    
T  45460015 tttgtcttgggatttatcaatgttggccggtggccacttgatatggtttttggtcggaaatgtttcttgagccaattg 45460092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 9e-19
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 8873620 - 8873683
Alignment:
Q  85 tatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||| ||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||    
T  8873620 tatcaatgttggccggtggccagttgatatggtttttggtcgaaaatgtttcttgaaccaattg 8873683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 9e-19
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 44345905 - 44345850
Alignment:
Q  93 ttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  44345905 ttggccggtggccccttgatatggtttttggtcgaaaacgtttcttgaaccaattg 44345850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 44055028 - 44054968
Alignment:
Q  65 tgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtc 125  Q
    |||||||||||||| |||| |||| |||||||||||| ||||||||||| |||||||||||    
T  44055028 tgtcgttttgtcttaagatttatcaatgttggccggttgccacttgatacggtttttggtc 44054968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 53908887 - 53908945
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||| |||||| ||||||||||| |||||||||  ||| |||||||||||||||||    
T  53908887 atgttggtcggtggtcacttgatatgatttttggtcggaaaggtttcttgaaccaattg 53908945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 821166 - 821220
Alignment:
Q  65 tgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggttt 119  Q
    ||||||||||||||||||| |||| ||||| ||| || ||||||||||| |||||    
T  821166 tgtcgttttgtcttgagatttatcaatgttcgccagttgccacttgatacggttt 821220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 10643264 - 10643206
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||||| |||||| || ||||| ||| ||  ||||||||||||||||||||||    
T  10643264 atgttggccggtagccactagacatggtatttagtggaaaacgtttcttgaaccaattg 10643206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 53705888 - 53705946
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||| ||||| |||||||||||||||||| |||  ||| |||||| ||||||||||    
T  53705888 atgttggtcggtgaccacttgatatggtttttagtcggaaatgtttctcgaaccaattg 53705946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 21960628 - 21960704
Alignment:
Q  72 ttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||||  | || ||||||| || | ||||||||| |||||||||||||  ||| ||||||||| |||||||    
T  21960628 ttgtcttgagaattgtcaatgttggtcgtttgccacttgacatggtttttggtcggaaatgtttcttgagccaattg 21960704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 7133398 - 7133477
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||||||| ||  | || ||||||| || | ||||||||| | ||| ||||||||||||| |||||||||| |||||    
T  7133398 gttttgtcttgggaattgtcaatgttggtcgtttgccacttgacacggtctttggtcaaaaacatttcttgaactaattg 7133477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 49; Significance: 2e-19; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 14346 - 14402
Alignment:
Q  92 gttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  14346 gttggccggtagccacttgacatggtttttggtcaaaaacgtttcttgaaccaattg 14402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 47; Significance: 4e-18; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 431 - 373
Alignment:
Q  65 tgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttgg 123  Q
    ||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||    
T  431 tgtcgttttgtcttgggatttatcaatgttggccggtggccacttgatatggtttttgg 373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 23898 - 23955
Alignment:
Q  91 tgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||| |||||||||||    
T  23898 tgttggccggtggccacttgatatggtttttggtcggaaatgtttcctgaaccaattg 23955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 17478 - 17536
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||| ||||| || ||||||||||||||||||||  ||| ||||| |||||||||||    
T  17478 atgttgaccggtagcaacttgatatggtttttggtcggaaatgtttcctgaaccaattg 17536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 262568 - 262649
Alignment:
Q  65 tgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaat 146  Q
    |||||||||| |||| ||| | || ||||||| ||||| ||||||||||||||||||||||  ||| |||||||||||||||    
T  262568 tgtcgttttgccttgggatttttcaatgttggtcggtgaccacttgatatggtttttggtcggaaatgtttcttgaaccaat 262649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 255962 - 256045
Alignment:
Q  65 tgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||| |||| ||| | || ||||||| ||||| ||||||||||||||||||||||  ||| ||||||||| |||||||    
T  255962 tgtcgttttgccttgggatttttcaatgttggtcggtgaccacttgatatggtttttggtcggaaatgtttcttgagccaattg 256045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 8536 - 8458
Alignment:
Q  70 ttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||| ||| | || |||||||| ||| |||||| || ||||||||| ||| ||||||||||||||||||||||    
T  8536 ttttgtcttgggatttgtcaatgttggctggtcgccactggacatggtttttagtcgaaaacgtttcttgaaccaattg 8458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 13281 - 13223
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||||||||||||||||||||||||||||| ||| |||| |||||| || |||||||    
T  13281 atgttggccggtggccacttgatatggtttttagtcgaaaatgtttctcgagccaattg 13223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407 (Bit Score: 38; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0407
Description:

Target: scaffold0407; HSP #1
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 5700 - 5745
Alignment:
Q  103 gccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||    
T  5700 gccacttgacatggtttttggtctaaaacgtttcttgaaccaattg 5745  T

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Target: scaffold0750 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 5482 - 5561
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||||||| ||| |||| ||||||||||   |||||||||||  ||||||||||| ||| ||||||||| |||||||    
T  5482 gttttgtcttgggatttatcaatgttggccgtatgccacttgatacagtttttggtcagaaatgtttcttgagccaattg 5561  T

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Target: scaffold0091 (Bit Score: 35; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 43045 - 43095
Alignment:
Q  98 cggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||| |||||||||||| ||||||||| |||| |||||||||||||||||    
T  43045 cggtgaccacttgatatgatttttggtcgaaaatgtttcttgaaccaattg 43095  T

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Target: scaffold0068 (Bit Score: 35; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 47209 - 47151
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||| |||||||||||||||||||||||||| | |||| |||| |||| |||||||    
T  47209 atgttggtcggtggccacttgatatggtttttgggcgaaaatgtttattgagccaattg 47151  T

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Target: scaffold0068; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 60657 - 60599
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||| |||||||||||||||||||||||||| | |||| |||| |||| |||||||    
T  60657 atgttggtcggtggccacttgatatggtttttgggcgaaaatgtttattgagccaattg 60599  T

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Target: scaffold0303 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 1426 - 1499
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaac 142  Q
    ||||||||||||||  | || |||||||||| | ||||||||| | ||| ||||||||||||| ||||||||||    
T  1426 gttttgtcttgagaattgtcaatgttggccgtttgccacttgacacggtctttggtcaaaaacatttcttgaac 1499  T

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Target: scaffold0120 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 18421 - 18358
Alignment:
Q  85 tatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||| |||||||||| | |||||||||||||| ||||||||  ||| ||||||||| |||||||    
T  18421 tatcaatgttggccgtttgccacttgatatggattttggtcggaaatgtttcttgagccaattg 18358  T

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Target: scaffold0034 (Bit Score: 32; Significance: 0.000000003; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 44902 - 44824
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||||||| ||| | || |||||||||| | ||||||||| |||| ||||||||  ||| |||||||||||||||||    
T  44902 gttttgtcttgggatttgtcaatgttggccgtttgccacttgacatgg-ttttggtcggaaatgtttcttgaaccaattg 44824  T

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Target: scaffold0034; HSP #2
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 39419 - 39341
Alignment:
Q  69 gttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    ||||||||||  ||| | || |||||||||| | ||||||||| |||||||| ||||  ||| |||||||||||||||||    
T  39419 gttttgtcttcggatttgtcaatgttggccgtttgccacttgacatggtttt-ggtcggaaatgtttcttgaaccaattg 39341  T

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Target: scaffold0195 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 18386 - 18328
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||| ||||| ||||||||| |||| |||||||| || |||||| ||||||||||||    
T  18386 atgttgtccggtagccacttgacatgggttttggtcgaatacgttttttgaaccaattg 18328  T

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Target: scaffold0195; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 20470 - 20412
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||||| ||||| ||||||||| |||| |||||||| || |||||| ||||||||||||    
T  20470 atgttgtccggtagccacttgacatgggttttggtcgaatacgttttttgaaccaattg 20412  T

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Target: scaffold0480 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 6414 - 6474
Alignment:
Q  65 tgtcgttttgtcttgagatgtatccatgttggccggtggccacttgatatggtttttggtc 125  Q
    |||||||||| |||| ||| | || ||||||| ||||  ||||||||||||||||||||||    
T  6414 tgtcgttttgccttgggatttgtcaatgttggtcggtaaccacttgatatggtttttggtc 6474  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 248620 - 248672
Alignment:
Q  90 atgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaac 142  Q
    |||||||||||| ||||||||  ||||||||| ||| |||| |||||||||||    
T  248620 atgttggccggttgccacttggcatggtttttagtcgaaaatgtttcttgaac 248672  T

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Target: scaffold0018 (Bit Score: 28; Significance: 0.0000008; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 52341 - 52384
Alignment:
Q  76 cttgagatgtatccatgttggccggtggccacttgatatggttt 119  Q
    |||||||| |||| |||||||||| | |||||||||||||||||    
T  52341 cttgagatttatcaatgttggccgtttgccacttgatatggttt 52384  T

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Target: scaffold0018; HSP #2
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 56293 - 56336
Alignment:
Q  76 cttgagatgtatccatgttggccggtggccacttgatatggttt 119  Q
    |||||||| |||| |||||||||| | |||||||||||||||||    
T  56293 cttgagatttatcaatgttggccgtttgccacttgatatggttt 56336  T

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Target: scaffold0009 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 237272 - 237209
Alignment:
Q  85 tatccatgttggccggtggccacttgatatggtttttggtcaaaaacgtttcttgaaccaattg 148  Q
    |||| ||||| |||| | ||||||||| | |||||||||||  ||| |||||||||||||||||    
T  237272 tatcaatgttagccgtttgccacttgacacggtttttggtcgtaaatgtttcttgaaccaattg 237209  T

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