View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO6142A-LTR4-TNT-insertion-7 (Length: 282)
Name: SO6142A-LTR4-TNT-insertion-7
Description: SO6142A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO6142A-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 47865633 - 47865899
Alignment:
| Q |
8 |
aattgtgtataacatcaacttatatgtcaaatatgtttggatctaagatttttcgattcaattcccaccttcgattcaattcccaccttcttatgtccca |
107 |
Q |
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| T |
47865633 |
aattgtgtataacatcaacttatatgtcaaatatgtttggatctaagatttttcgattcaattcccaccttcgattcaattcccaccttcttatgtccca |
47865732 |
T |
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| Q |
108 |
tcatcttgtgttctcaaattattttgaaggcacatgaaagggatgacaaaccttctctctccttccaccttcatcttcttgtacttcatatttagtttta |
207 |
Q |
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| T |
47865733 |
tcatcttgtgttctcaaattattttgaaggcacatgaaagggatgacaaaccttctctctccttccaccttcatcttcttgtacttcatatttagtttta |
47865832 |
T |
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| Q |
208 |
gttgctaaccttttgtaatgcatagtgtcgtgtcaacgtaaatatattacgaaatcatgttcaatta |
274 |
Q |
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| T |
47865833 |
gttgctaaccttttgtaatgcatagtgtcgtgtcaacgtaaatatattacgaaatcatgttcaatta |
47865899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 31805598 - 31805530
Alignment:
| Q |
140 |
catgaaagggatgacaaaccttctctctccttccaccttcatcttcttgtacttcatatttagttttag |
208 |
Q |
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| T |
31805598 |
catgagagggatggcaagccttctccctcattccacctccatattcttgtacttcaaatttagctttag |
31805530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 8005212 - 8005149
Alignment:
| Q |
149 |
gatgacaaaccttctctctccttccaccttcatcttcttgtacttcatatttagttttagttgc |
212 |
Q |
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| T |
8005212 |
gatgacaaacattctccctccatccacctccatcttcttgtgctacatattcggttttagttgc |
8005149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 41932010 - 41932128
Alignment:
| Q |
106 |
catcatcttgtgttctcaaattattttgaaggcacatgaaagggatgacaaaccttctctctccttccaccttcatcttcttgtacttcatatttagttt |
205 |
Q |
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| T |
41932010 |
catcatcatgtgttttcaaattcttctgagggtacatgagagggatgacatgtcttctccttcgttccacctccatcttcttgtactacatatttaattt |
41932109 |
T |
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| Q |
206 |
tagttgctaaccttttgta |
224 |
Q |
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| T |
41932110 |
tagttgccaacattttgta |
41932128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 53966968 - 53967030
Alignment:
| Q |
146 |
agggatgacaaaccttctctctccttccaccttcatcttcttgtacttcatatttagttttag |
208 |
Q |
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| T |
53966968 |
agggataacaaaccttctccctcattccactttcatcttcttgtacttcatattaagctttag |
53967030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 6459580 - 6459646
Alignment:
| Q |
140 |
catgaaagggatgacaaaccttctctctccttccaccttcatcttcttgtacttcatatttagtttta |
207 |
Q |
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| T |
6459580 |
catgaaagggatgacaaac-ttctctcttcttccacctctatcttcttgtactacaactttagtttta |
6459646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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