View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO6142A-LTR4-TNT-insertion-9 (Length: 566)
Name: SO6142A-LTR4-TNT-insertion-9
Description: SO6142A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO6142A-LTR4-TNT-insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 8 - 557
Target Start/End: Complemental strand, 36872517 - 36871968
Alignment:
| Q |
8 |
gagcataggtttaaggaagtcatatcaagcaaaggcttagatgttgtccaaactgaggtcaaagatatggattgggaaagcaccttccatgttcgtcacc |
107 |
Q |
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| T |
36872517 |
gagcataggtttaaggaagtcatatcaagcaaaggcttagatgttgtccaaactgaggtcaaagatatggattgggaaagcaccttccatgttcgtcacc |
36872418 |
T |
|
| Q |
108 |
tccctgaatcaaacatttcagagatacctgatctcagtgatgaatacaggttacacaaaacaaatattaataggacatatataacacattgcataacata |
207 |
Q |
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| T |
36872417 |
tccctgaatcaaacatttcagagatacctgatctcagtgatgaatacaggttacacaaaacaaatattaataggacatatataacacattgcataacata |
36872318 |
T |
|
| Q |
208 |
atannnnnnngtcacgtttctatgattttgtagaagcatatatatcttcttttatcatgattctaaatctcttatggaaactgtggtacaggaaagtaat |
307 |
Q |
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| T |
36872317 |
atatttttttgtcacgtttctatgattttgtagaagcatatatatcttcttttatcatgattctaaatctcttatggaaactgtggtacaggaaagtaat |
36872218 |
T |
|
| Q |
308 |
gaaggaattttctctgaggttagagaaactagcagaagagcttttggatttgttatgtgagaatcttggactagagaaaggttaccttaaaaaggcattt |
407 |
Q |
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| T |
36872217 |
gaaggaattttctctgaggttagagaaactagcagaagagcttttggatttgttatgtgagaatcttggactagagaaaggttaccttaaaaaggcattt |
36872118 |
T |
|
| Q |
408 |
tatggatcaagaggaccaacttttggcaccaaagtagccaactaccctcaatgcccaaatccagagctggtgaagggtcttcgtgctcacaccgatgccg |
507 |
Q |
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| T |
36872117 |
tatggatcaagaggaccaacttttggcaccaaagtagccaactaccctcaatgcccaaatccagagctggtgaagggtcttcgtgctcacaccgatgccg |
36872018 |
T |
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| Q |
508 |
gaggaatcatccttctcttccaggatgataaggtcagtggcctacaattg |
557 |
Q |
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| T |
36872017 |
gaggaatcatccttctcttccaggatgataaggtcagtggcctacaattg |
36871968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 296 - 550
Target Start/End: Original strand, 37629318 - 37629572
Alignment:
| Q |
296 |
caggaaagtaatgaaggaattttctctgaggttagagaaactagcagaagagcttttggatttgttatgtgagaatcttggactagagaaaggttacctt |
395 |
Q |
| |
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||||||| ||||||||||||| || ||| | |||||| ||| ||||| ||||| | || || |||||||| |||||||||||||| || || ||||| |
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| T |
37629318 |
caggaaatcaatgaaggaatttgctttgaagctagagacacttgcagaggagctactagacttattatgtgaaaatcttggactagaaaaggggtaccta |
37629417 |
T |
|
| Q |
396 |
aaaaaggcattttatggatcaagaggaccaacttttggcaccaaagtagccaactaccctcaatgcccaaatccagagctggtgaagggtcttcgtgctc |
495 |
Q |
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| T |
37629418 |
aaaaaggctttgtatggatcaaagggaccaacttttggaaccaaggttgcaaactaccctccatgcccaaaaccagaccttgtaaagggtctccgtgcac |
37629517 |
T |
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| Q |
496 |
acaccgatgccggaggaatcatccttctcttccaggatgataaggtcagtggcct |
550 |
Q |
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| T |
37629518 |
acaccgatgccggtggaatcatccttcttttccaagatgacaaggtcagtggcct |
37629572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 56 - 159
Target Start/End: Original strand, 37628963 - 37629066
Alignment:
| Q |
56 |
caaactgaggtcaaagatatggattgggaaagcaccttccatgttcgtcacctccctgaatcaaacatttcagagatacctgatctcagtgatgaataca |
155 |
Q |
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||||||||||||||||| ||||| ||||| || || |||||| | |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
37628963 |
caaactgaggtcaaagacatggactgggagagtactttccatttgcgtcacctacctgagtcaaacatttcagagatccctgatctcagtgatgaataca |
37629062 |
T |
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| Q |
156 |
ggtt |
159 |
Q |
| |
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|||| |
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| T |
37629063 |
ggtt |
37629066 |
T |
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