View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO6207A-LTR4-TNT-insertion-2 (Length: 128)
Name: SO6207A-LTR4-TNT-insertion-2
Description: SO6207A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO6207A-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 1e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 35171585 - 35171697
Alignment:
| Q |
8 |
cgttgatgatgtgtgactaccatgtccttgtgtgtctctagctgagttcatactgattttgacatttggttttgatgcaatcacacctttgttgaaatat |
107 |
Q |
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| T |
35171585 |
cgttgatgatgtgtgactaccatgtccttgtgtgtctctagctgagttcatactgattttgacatttggttttgatgcaatcacacctttgttgaaatat |
35171684 |
T |
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| Q |
108 |
ctagctccaatta |
120 |
Q |
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| T |
35171685 |
ctagctccaatta |
35171697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 1e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 30098909 - 30098800
Alignment:
| Q |
9 |
gttgatgatgtgtgactaccatgtccttgtgtgtctctagctgagttcatactgattttgacatttggttttgatgcaatcacacctttgttgaaatatc |
108 |
Q |
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| T |
30098909 |
gttgatgatgtgtgagttccatgccctatagtgtctctagctgagttcatgctgattgtaacatttggatttgaagcaatcacacctttgttgaaatatc |
30098810 |
T |
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| Q |
109 |
tagctccaat |
118 |
Q |
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| T |
30098809 |
tagctccaat |
30098800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 30091988 - 30092066
Alignment:
| Q |
40 |
tgtctctagctgagttcatactgattttgacatttggttttgatgcaatcacacctttgttgaaatatctagctccaat |
118 |
Q |
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| T |
30091988 |
tgtctctagctgagttcatcctgattctaacatttggatttgaagcaatcacacctttgttgaaagatctagctccaat |
30092066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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