View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: SO6207A-LTR4-TNT-insertion-4 (Length: 296)
Name: SO6207A-LTR4-TNT-insertion-4
Description: SO6207A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO6207A-LTR4-TNT-insertion-4 |
 | |
|
| [»] scaffold0400 (3 HSPs) |
| | |
|
| [»] scaffold0365 (3 HSPs) |
| | |
|
| [»] scaffold0289 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 14468253 - 14467973
Alignment:
| Q |
8 |
tcatacacaatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttctgttcgaagttcgaaata |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14468253 |
tcatacacaatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttctgttcgaagttcgaaata |
14468154 |
T |
|
| Q |
108 |
gataataggagatcccataaccaaataatgctaacnnnnnnntgcctagagtgatgggtaaaattaccaccaattttttgttagtcttatgagtattagg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14468153 |
gataataggagatcccataaccaaataatgctaacaaaaaaatgcctagagtgatgggtaaaattaccaccaattttttgttagtcttatgagtattagg |
14468054 |
T |
|
| Q |
208 |
gttcctattggatgttggacaaggctttaggctagaagcattaccacacaagtctttgttgtttctcagtgcttcaattgg |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14468053 |
gttcctattggatgttggacaaggctttaggctagaagcattaccacacaagtctttgttgtttctcagtgcttcaattgg |
14467973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 14504432 - 14504152
Alignment:
| Q |
8 |
tcatacacaatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttctgttcgaagttcgaaata |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
14504432 |
tcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttgtgttcgaagttcgaaata |
14504333 |
T |
|
| Q |
108 |
gataataggagatcccataaccaaataatgctaacnnnnnnntgcctagagtgatgggtaaaattaccaccaattttttgttagtcttatgagtattagg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
14504332 |
gataataggagatcccataaccaaataatgctaacaaaaaaatgcctagagtgatgggtaaaattaccaccaattttttgttagtcttatgagtattatg |
14504233 |
T |
|
| Q |
208 |
gttcctattggatgttggacaaggctttaggctagaagcattaccacacaagtctttgttgtttctcagtgcttcaattgg |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14504232 |
gttcctattggatgttggacaaggctttaggctagatgcattaccacacaagtctttgttgtttctcagtgcttcaattgg |
14504152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 150 - 288
Target Start/End: Complemental strand, 14482293 - 14482155
Alignment:
| Q |
150 |
tgcctagagtgatgggtaaaattaccaccaattttttgttagtcttatgagtattagggttcctattggatgttggacaaggctttaggctagaagcatt |
249 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | || | |||||||||||||||||||||||||||| ||||| |
|
|
| T |
14482293 |
tgcctagagtgatgggtaaaactaccaccaactttttgttagtcttatgagtattatgttttccgctggatgttggacaaggctttaggctagaggcatt |
14482194 |
T |
|
| Q |
250 |
accacacaagtctttgttgtttctcagtgcttcaattgg |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14482193 |
accacacaagtctttgttgtttctcagtgcttcaattgg |
14482155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 14483198 - 14483067
Alignment:
| Q |
11 |
tacacaatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttctgttcgaagttcgaaatagat |
110 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
14483198 |
tacaccatttttcaatcaaaactccatattgaaaatagattttcagggtgtgattcttctgcaaccttggattcttttttgtttgaagttcgaaatagat |
14483099 |
T |
|
| Q |
111 |
aataggagatcccataaccaaataatgctaac |
142 |
Q |
| |
|
|||| ||||| |||||| |||||||||||||| |
|
|
| T |
14483098 |
aatatgagataccataaacaaataatgctaac |
14483067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 15002554 - 15002277
Alignment:
| Q |
11 |
tacacaatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttctgttcgaagttcgaaatagat |
110 |
Q |
| |
|
||||| |||||||||||||| ||||||||| ||||||||||||| | | |||||| |||| |||| |||||||| || | ||||||||| | | | |
|
|
| T |
15002554 |
tacaccatttttccatcaaagctccatatttcaaatagattttcaattttcaattcttgtgcaggcttgtattcttttgtgcttgaagttcgacaaaaaa |
15002455 |
T |
|
| Q |
111 |
aataggagatcccataaccaaataatgctaacnnnnnnntgcctagagtgatgggtaaaattaccaccaattttttgttagtcttatgagtattagggtt |
210 |
Q |
| |
|
|| |||||||||||| ||| ||||||||| ||| ||||||| || || || || |||||| |||||||||| |||||| ||| | | | |
|
|
| T |
15002454 |
ggtatgagatcccataaacaatcaatgctaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttagtattatgactatgaaaggt |
15002355 |
T |
|
| Q |
211 |
cctattggatgttggacaaggctttaggctagaagcattaccacacaagtctttgttgtttctcagtgcttcaattgg |
288 |
Q |
| |
|
| | ||||||| ||||||| ||||| |||| |||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
15002354 |
gccacccgatgttgagcaaggctctaggccagaaacattaccacacaagcctttgttatttctcagtgcttcaattgg |
15002277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 14522286 - 14522562
Alignment:
| Q |
8 |
tcatacacaatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttctgttcgaagttcgaaata |
107 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| ||||||||||||||| || |||||||| || |||| ||||||| || | ||||| | | | | |
|
|
| T |
14522286 |
tcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagtgcaacaaa |
14522385 |
T |
|
| Q |
108 |
gataataggagatcccataaccaaataatgctaacnnnnnnntgcctagagtgatgggtaaaattaccaccaattttttgttagtcttatgagtattagg |
207 |
Q |
| |
|
| || |||||||||||| |||||||||||||| ||||||||||| || ||||| || |||||| |||||||||| |||||| ||| |
|
|
| T |
14522386 |
attggtatgagatcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatgactatggaa |
14522485 |
T |
|
| Q |
208 |
gttcctattggatgttggacaaggctttaggctagaagcattaccacacaagtctttgttgtttctcagtgcttcaa |
284 |
Q |
| |
|
||| | | ||||||| ||||||| ||||| ||| ||||||| |||||| ||||||| ||||| | |||||||| |
|
|
| T |
14522486 |
gtttccacctgatgttgagcaaggctctaggccagagacattaccgcacaagcctttgttatttctaaatgcttcaa |
14522562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 14532410 - 14532471
Alignment:
| Q |
11 |
tacacaatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgc |
72 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||||||||||||||| || |||||||||| |
|
|
| T |
14532410 |
tacaccatttttccatcaaagctccatattgcaaatagattttcagtttgaaattcttctgc |
14532471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 15017565 - 15017431
Alignment:
| Q |
8 |
tcatacacaatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttctgttcgaagttcgaaata |
107 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||| ||||||||||||| | || |||||| |||| |||| |||||| | || | ||||||||| | | |
|
|
| T |
15017565 |
tcatacaccattttgccatcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttctgtgcttgaagttcgacaaa |
15017466 |
T |
|
| Q |
108 |
gataataggagatcccataaccaaataatgctaac |
142 |
Q |
| |
|
| | || |||||||||||| ||| |||||||||| |
|
|
| T |
15017465 |
aaaagtatgagatcccataaacaattaatgctaac |
15017431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 14532645 - 14532687
Alignment:
| Q |
246 |
cattaccacacaagtctttgttgtttctcagtgcttcaattgg |
288 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||||||||||| |
|
|
| T |
14532645 |
cattaccacacaagcctttgttatttctaagtgcttcaattgg |
14532687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 6938 - 6843
Alignment:
| Q |
8 |
tcatacacaatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttctgttcgaagttcga |
103 |
Q |
| |
|
|||||||| | |||||||||||| |||||||||| ||||||||||||||| || ||||| ||||| |||| |||||||| || | ||||||||| |
|
|
| T |
6938 |
tcatacaccaattttccatcaaagctccatattgcaaatagattttcagtttgaaattctcctgcagtcttgtattcttttgtgcttgaagttcga |
6843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 12991 - 12949
Alignment:
| Q |
246 |
cattaccacacaagtctttgttgtttctcagtgcttcaattgg |
288 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
12991 |
cattaccacacaagcctttgttatttctcagtgcttcaattgg |
12949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 13238 - 13158
Alignment:
| Q |
8 |
tcatacacaatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattctttt |
88 |
Q |
| |
|
||||| || |||||||||||||| |||||| ||| ||| ||||||||||| || ||||||||| | |||| |||||||| |
|
|
| T |
13238 |
tcatataccatttttccatcaaagctccatgttgcaaagagattttcagtttgaaattcttctgtaggcttgtattctttt |
13158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 7582 - 7487
Alignment:
| Q |
8 |
tcatacacaatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttctgttcgaagttcga |
103 |
Q |
| |
|
|||||||| | |||||||||||| |||||||||| ||||||||||||||| || ||||| ||||| |||| |||||||| || | ||||||||| |
|
|
| T |
7582 |
tcatacaccaattttccatcaaagctccatattgcaaatagattttcagtttgaaattctcctgcagtcttgtattcttttgtgcttgaagttcga |
7487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 13634 - 13592
Alignment:
| Q |
246 |
cattaccacacaagtctttgttgtttctcagtgcttcaattgg |
288 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
13634 |
cattaccacacaagcctttgttatttctcagtgcttcaattgg |
13592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 13881 - 13801
Alignment:
| Q |
8 |
tcatacacaatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattctttt |
88 |
Q |
| |
|
||||| || |||||||||||||| |||||| ||| ||| ||||||||||| || ||||||||| | |||| |||||||| |
|
|
| T |
13881 |
tcatataccatttttccatcaaagctccatgttgcaaagagattttcagtttgaaattcttctgtaggcttgtattctttt |
13801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 17848978 - 17848933
Alignment:
| Q |
8 |
tcatacacaatttttccatcaaaactccatattgaaaatagatttt |
53 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
17848978 |
tcatacaccatttttccatcaaaactccatatggtaaatagatttt |
17848933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 15664904 - 15664949
Alignment:
| Q |
8 |
tcatacacaatttttccatcaaaactccatattgaaaatagatttt |
53 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
15664904 |
tcatacaccattttcccatcaaaactccatattgtaaatacatttt |
15664949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 15676738 - 15676783
Alignment:
| Q |
8 |
tcatacacaatttttccatcaaaactccatattgaaaatagatttt |
53 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
15676738 |
tcatacaccattttcccatcaaaactccatattgtaaatacatttt |
15676783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 17772 - 17817
Alignment:
| Q |
8 |
tcatacacaatttttccatcaaaactccatattgaaaatagatttt |
53 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
17772 |
tcatacaccattttcccatcaaaactccatattgtaaatacatttt |
17817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 17027339 - 17027290
Alignment:
| Q |
8 |
tcatacacaatttttccatcaaaactccatattgaaaatagattttcagt |
57 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| || ||||||||| ||||| |
|
|
| T |
17027339 |
tcatacaccatttttccatcaaagctccatactgcaaatagattatcagt |
17027290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 17557831 - 17557782
Alignment:
| Q |
8 |
tcatacacaatttttccatcaaaactccatattgaaaatagattttcagt |
57 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| || ||||||||| ||||| |
|
|
| T |
17557831 |
tcatacaccatttttccatcaaagctccatactgcaaatagattatcagt |
17557782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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