View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO6232B-LTR4-TNT-insertion-1 (Length: 638)
Name: SO6232B-LTR4-TNT-insertion-1
Description: SO6232B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO6232B-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 8 - 628
Target Start/End: Original strand, 39778676 - 39779296
Alignment:
| Q |
8 |
acacatacatctaatcaaatcttatcacacagatatttgtccactattttagataaaatataattagatgcatgtctaaaacnnnnnnnnatacagttag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39778676 |
acacatacatctaatcaaatcttatcacacagatatttgtccactattttagataaaatataattagatgcatgtctaaaacttttttttatacagttag |
39778775 |
T |
|
| Q |
108 |
gatatatgatattaaactcgttttacatactgatgaatcttgactcttttgtggagcaggagatatttggaaagggaaggaaggatatagaagcacatga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39778776 |
gatatatgatattaaactcgttttacatactgatgaatcttgactcttttgtggagcaggagatatttggaaagggaaggaaggatatagaagcacatga |
39778875 |
T |
|
| Q |
208 |
agagcatgagaagagacttattttagagatactagtgagccttatgccaagggagaagaatgcaatatctgtcagctttctttcactatggcttaaggca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39778876 |
agagcatgagaagagacttattttagagatactagtgagccttatgccaagggagaagaatgcaatatctgtcagctttctttcactatggcttaaggca |
39778975 |
T |
|
| Q |
308 |
gcaatatatcttgagacaaccgttgcttgcaggtttgatttggagagaaggatagccatgcaattaggacaggctgttttggatgatcttctttttcctt |
407 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39778976 |
gcaatatatcttgagacaactgttgcttgcaggtttgatttggagagaaggatagccatgcaattaggacaggctgttttggatgatcttctttttcctt |
39779075 |
T |
|
| Q |
408 |
catttagcggcgacacatcgtttgatgtagaaacagtgcaaagaatcatgatgaattaccttgaatctgaagttgaaaatcattacaatgcagatgatga |
507 |
Q |
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| T |
39779076 |
catttagcggcgacacatcgtttgatgtagaaacagtgcaaagaatcatgatgaattaccttgaatctgaagttgaaaatcattacaatgcagatgatga |
39779175 |
T |
|
| Q |
508 |
atattattcttctccccaaagggatatttttcgggttggaaagttattggagagttaccttgctgaaatagctactgatagaaatttatcagttccaaag |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39779176 |
atattattcttctccccaaagggatatttttcgggttggaaagttattggagagttaccttgctgaaatagctactgatagaaatttatcagttccaaag |
39779275 |
T |
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| Q |
608 |
tttatctgtcttgctgaatta |
628 |
Q |
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||||||||||||||||||||| |
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| T |
39779276 |
tttatctgtcttgctgaatta |
39779296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 161 - 624
Target Start/End: Complemental strand, 5676997 - 5676522
Alignment:
| Q |
161 |
gagcaggagatatttggaaagggaaggaaggatatagaagcacatgaagagcatgagaagagacttattttagagatactagtgagccttatgccaaggg |
260 |
Q |
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|||||||| ||||||||||||||||||||| | || ||| || |||||||||| ||||| |||||||||||| | |||||||||| | |||| | |
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| T |
5676997 |
gagcaggatatatttggaaagggaaggaagaagattgaaccaagacaagagcatgaaaagagggttattttagagacaatagtgagcctattaccaaaag |
5676898 |
T |
|
| Q |
261 |
agaagaatgcaatatctgtcagctttctttcactatggcttaaggcagcaatatatcttgagacaaccgttgcttgcaggtttgatttggagagaaggat |
360 |
Q |
| |
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||||||||||||| || || |||||||| || | ||| ||||| ||||||||||| ||||| |||||||||||| |||||||||||| ||| || |
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| T |
5676897 |
agaagaatgcaatgtcagtaagctttctatctatgctgctacgtgcagcgatatatcttgatacaacagttgcttgcaggcttgatttggagaaaagaat |
5676798 |
T |
|
| Q |
361 |
agccatgcaattaggacaggctgttttggatgatcttctttttcc------ttcatttagcggcgacacatcgtttgatgtagaaacagtgcaaagaatc |
454 |
Q |
| |
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|| |||||||||||||| |||||| ||||||||||||| |||| |||||||| ||| ||||| | || ||||| || || || ||||| ||| |
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| T |
5676797 |
ggcaatgcaattaggacaagctgttctggatgatcttctcattccttcatattcatttaccggggacacgttattcgatgtggacacggttcaaaggatc |
5676698 |
T |
|
| Q |
455 |
atgatgaattaccttgaatctgaagttgaaaatca------ttacaatgcagatgatgaatattattcttctccccaaagggatatttttcgggttggaa |
548 |
Q |
| |
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|||| ||||||| |||||| || ||| ||| || || |||| ||||||||||||| |||| |||| ||||| |||||| |||||||||| |
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| T |
5676697 |
atgaataattaccaagaatctcaaattggaaaccactttgtctataatggtgatgatgaatatttttctcctccacaaagtgatattgaacgggttggaa |
5676598 |
T |
|
| Q |
549 |
agttattggagagttaccttgctgaaatagctactgatagaaatttatcagttccaaagtttatctgtcttgctga |
624 |
Q |
| |
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|| || |||| | || |||||||||||||| ||||| || |||||||||||| ||||||| ||| |||| ||||| |
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| T |
5676597 |
agctaatggaaaactatcttgctgaaatagcaactgacaggaatttatcagttgcaaagttcatcagtctagctga |
5676522 |
T |
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