View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO6232B-LTR4-TNT-insertion-3 (Length: 667)
Name: SO6232B-LTR4-TNT-insertion-3
Description: SO6232B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO6232B-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 636; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 10 - 657
Target Start/End: Original strand, 44629007 - 44629654
Alignment:
| Q |
10 |
gggtactctccaactcgtaggacaatccttgctttctttgcaggtcacttgcatggttacatacgatatctactcctcgatacatggaaaaacaaagacc |
109 |
Q |
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| T |
44629007 |
gggtactctccatctcgtaggacaatccttgctttctttgcaggtcacttgcatggttacatacgatatctactcctcgatacatggaaaaacaaagacc |
44629106 |
T |
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| Q |
110 |
aagatgtgcaagtctatgaagaactccctgatgaagattcttaccacacaaagcttagaagcagcaagttttgtttgtgtccaagtggttatgaagtagc |
209 |
Q |
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| T |
44629107 |
aagatgtgcaagtctatgaagaactccctgatgaagattcttaccacacaaagcttagaagcagcaagttttgtttgtgtccaagtggttatgaagtagc |
44629206 |
T |
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| Q |
210 |
aagtccaagaatagtggaagctatatttgcagaatgtgtgcctgtattgatttctgatagctatgttccaccctttagtgatgttttgaattggaaagcg |
309 |
Q |
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| T |
44629207 |
aagtccaagaatagtggaagctatatttgcagaatgtgtgcctgtattgatttctgatagctatgttccaccctttagtgatgttttgaattggaaagcg |
44629306 |
T |
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| Q |
310 |
ttttcagttcaaatagatgtgaaggatattcctaatataaaaaatatactcatggggatttcacagaggcagtacttgaagatgcagaggagagtgaaac |
409 |
Q |
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| T |
44629307 |
ttttcagttcaaatagatgtgaaggatattcctaatataaaaaatatactcatggggatttcacagaggcagtacttgaagatgcagaggagagtgaaac |
44629406 |
T |
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| Q |
410 |
aagtgcaaagacattttgttcctaatgagccaccaaagaggtttgatgtatttcatatgactatccattccatttggctcagaaggttgaacgtccgtat |
509 |
Q |
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| T |
44629407 |
aagtgcaaagacattttgttcctaatgagccaccaaagaggtttgatgtatttcatatgactattcattccatttggctcagaaggttgaacgtccgtat |
44629506 |
T |
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| Q |
510 |
tcatgatgatcagtgatagcagatcctcaagattaacagattttgtaggtatagaaaaatgtttctttcttatacatttgtgaaaacccaaggaaattag |
609 |
Q |
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| T |
44629507 |
tcatgatgatcagtgatagcagatcctcaagattaacagattttgtaggtatagaaaaatgtttctttcttatacatttgtgaaaacccaaggaaattag |
44629606 |
T |
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| Q |
610 |
agatttacttagtattatcgcataacagattcattatcattgtgatta |
657 |
Q |
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| T |
44629607 |
agatttacttagtattattgcataacagattcattatcattgtgatta |
44629654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 49302273 - 49302353
Alignment:
| Q |
174 |
caagttttgtttgtgtccaagtggttatgaagtagcaagtccaagaatagtggaagctatatttgcagaatgtgtgcctgt |
254 |
Q |
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| T |
49302273 |
caagttctgtctttgtccaagtggttttgaagtggctagcccaagaattgtggaatcaatttatgcagaatgtgtgcctgt |
49302353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 47728019 - 47727967
Alignment:
| Q |
178 |
ttttgtttgtgtccaagtggttatgaagtagcaagtccaagaatagtggaagc |
230 |
Q |
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| T |
47728019 |
ttttgtttgtgtccaagtggatatgaagtggctagtccaagaattgtggaagc |
47727967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 47725853 - 47725777
Alignment:
| Q |
172 |
agcaagttttgtttgtgtccaagtggttatgaagtagcaagtccaagaatagtggaagctatatttgcagaatgtgt |
248 |
Q |
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| T |
47725853 |
agcaagttttgtttgtgccctagtggacatgaagtggcaagtccaagagtggtggaagcaatttatgcaggatgtgt |
47725777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 47705304 - 47705267
Alignment:
| Q |
172 |
agcaagttttgtttgtgtccaagtggttatgaagtagc |
209 |
Q |
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| T |
47705304 |
agcaagttttgcttgtgtccaagtggctatgaagtagc |
47705267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 439 - 521
Target Start/End: Complemental strand, 26972918 - 26972836
Alignment:
| Q |
439 |
ccaccaaagaggtttgatgtatttcatatgactatccattccatttggctcagaaggttgaacgtccgtattcatgatgatca |
521 |
Q |
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| T |
26972918 |
ccaccaaagaggtttgatgtgtttcatatgatactccattctgtgtggcttagaagattgaacttcagagttcatgatgatca |
26972836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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