View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO6232B-LTR4-TNT-insertion-6 (Length: 435)
Name: SO6232B-LTR4-TNT-insertion-6
Description: SO6232B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO6232B-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 8 - 427
Target Start/End: Original strand, 47076981 - 47077400
Alignment:
| Q |
8 |
cattcaaatgaaatgatttcatacaaactatacacagagtgttgagtacagaggaaaaaaggggatatgggaaaagaaaagaatttaccaacatagtagt |
107 |
Q |
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| T |
47076981 |
cattcaaatgaaatgatttcatacaaactatacacagagtgttgagtacagaggaaaaaaggggatatgggaaaagaaaagaatttaccaacatagtagt |
47077080 |
T |
|
| Q |
108 |
acgaacgtagatgttaaaaagaagagaaggagaatctcctatcaaatctaaaacagcaaacggtgatggcaaatgaatattccatttaccccccaatgta |
207 |
Q |
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| T |
47077081 |
acgaacgtagatgttaaaaagaagagaaggagaatctcctatcaaatctaaaacagcaaacggtgatggcaaatgaatattccatttaccccccaatgta |
47077180 |
T |
|
| Q |
208 |
ataacaacaatgtcacactagaaaaggtgtattcaccattttctactttctaagggaacaacaagctaagtcacagttcacaaaattacaagtggtgaat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47077181 |
ataacaacaatgtcacactagaaaaggtgtattcaccattttctactttctaagggaacaacaagctaagtcacagttcacaaaattacaagtggtgaat |
47077280 |
T |
|
| Q |
308 |
aatataggtaaattggaaaaatatgtgactagcttggtctattatttttccaattcagtaacaaatttactacaaacaaaatcatccatactannnnnnn |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47077281 |
aatataggtaaattggaaaaatatgtgactagcttggtctattatttttccaattcagtaacaaatttactacaaacaaaatcatccatactattttttt |
47077380 |
T |
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| Q |
408 |
nctgtaagacatagacatta |
427 |
Q |
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||||||||||||||||||| |
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| T |
47077381 |
tctgtaagacatagacatta |
47077400 |
T |
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