View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO6232B-LTR4-TNT-insertion-7 (Length: 76)
Name: SO6232B-LTR4-TNT-insertion-7
Description: SO6232B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO6232B-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr3 (Bit Score: 60; Significance: 3e-26; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 46974611 - 46974552
Alignment:
| Q |
9 |
tggctacaaacaaccgaacgagaatggaaccacctcttccgaaggaatattttgggaatt |
68 |
Q |
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| T |
46974611 |
tggctacaaacaaccgaacgagaatggaaccacctcttccgaaggaatattttgggaatt |
46974552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 46980600 - 46980541
Alignment:
| Q |
9 |
tggctacaaacaaccgaacgagaatggaaccacctcttccgaaggaatattttgggaatt |
68 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
46980600 |
tggctacaaacaaccgaacaagaatggaaccacctcttcctaaggaatattttgggaatt |
46980541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 46997667 - 46997615
Alignment:
| Q |
16 |
aaacaaccgaacgagaatggaaccacctcttccgaaggaatattttgggaatt |
68 |
Q |
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| T |
46997667 |
aaacaaccgaacgagaatggaaccacctcttcctaaggaatattttgggaatt |
46997615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-17
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 46995414 - 46995355
Alignment:
| Q |
9 |
tggctacaaacaaccgaacgagaatggaaccacctcttccgaaggaatattttgggaatt |
68 |
Q |
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|||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
46995414 |
tggctataaacaaccgaacgagaatggaaccgtctcttcctaaggaatattttgggaatt |
46995355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 47001330 - 47001278
Alignment:
| Q |
16 |
aaacaaccgaacgagaatggaaccacctcttccgaaggaatattttgggaatt |
68 |
Q |
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|||||||||||| ||||| ||||| |||||||| || |||||||||||||||| |
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| T |
47001330 |
aaacaaccgaactagaatagaaccgcctcttccaaatgaatattttgggaatt |
47001278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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