View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO6324B-LTR4-TNT-insertion-2 (Length: 132)
Name: SO6324B-LTR4-TNT-insertion-2
Description: SO6324B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO6324B-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 5e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 34705101 - 34704985
Alignment:
| Q |
8 |
cacgatgcttggcagaaaatggggattgggttgcgtttagggatgtgctagcacttattatctatgggacaatcttattcccgagtgcacaagaactcat |
107 |
Q |
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| T |
34705101 |
cacgatgcttggcagaaaatggggattgggttgcgtttagggatgtgctagcacttattatctatgggacaatcttattcccgagtgcacaagaactcat |
34705002 |
T |
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| Q |
108 |
agattttgcagcaattg |
124 |
Q |
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| T |
34705001 |
agattttgcagcaattg |
34704985 |
T |
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