View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO6324B-LTR4-TNT-insertion-3 (Length: 488)
Name: SO6324B-LTR4-TNT-insertion-3
Description: SO6324B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO6324B-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 131 - 285
Target Start/End: Complemental strand, 11177991 - 11177837
Alignment:
| Q |
131 |
gtacgataaagcaaaccttacaagcataaatatgatcatcattacattgcatacatataagatgacatgatagtcgtaaccatagccatagctacagcat |
230 |
Q |
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| T |
11177991 |
gtacgataaagcaaaccttacaagcataaatatgatcatcattacattgcatacatataagatgacatgatagtcgtaaccatagccatagctacagcat |
11177892 |
T |
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| Q |
231 |
agcatagcattcttcatcattgattcaatcttattctaacgagaatgaatgaagg |
285 |
Q |
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| T |
11177891 |
agcatagcattcttcatcattgattcaatcttattctaacgagaatgaatgaagg |
11177837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 348 - 478
Target Start/End: Complemental strand, 11177774 - 11177644
Alignment:
| Q |
348 |
gttattcttgttgatgcaaaaggagaatttggagttcgagttctgatacaatgtcttatcaattgagttcaacttacgagtttattactttgaatagttt |
447 |
Q |
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| T |
11177774 |
gttattcttgttgatgcaaaaggagaatttggagttcgagttctgatacaatgtcttatcaattgagttcaacttacgagtttattactttgaatagttt |
11177675 |
T |
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| Q |
448 |
ttcattttaaaatagtaaaaatgaaaaatta |
478 |
Q |
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| T |
11177674 |
ttcattttaaaatagtaaaaatgaaaaatta |
11177644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 11178114 - 11178018
Alignment:
| Q |
8 |
attgtgattaacacaaaagataaaaagagagaatcaaaagagtatgtgtcagaatcagaaaatttggcctccaacacacttcctttcatttctattc |
104 |
Q |
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| T |
11178114 |
attgtgattaacacaaaagataaaaagagagaatcaaaagagtatgtgtcagaatcagaaaatttggcctccaacacacttcctttcatttctattc |
11178018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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