View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO6324B-LTR4-TNT-insertion-5 (Length: 275)
Name: SO6324B-LTR4-TNT-insertion-5
Description: SO6324B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO6324B-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 268
Target Start/End: Original strand, 8913211 - 8913472
Alignment:
| Q |
7 |
attatctcctattctcactcactatctacattcaaggacgccatttccttggtctcatcttcaacgagttcaccaaccttaacttgctcaacctcaagca |
106 |
Q |
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| T |
8913211 |
attatctcctattctcactcactatctacattcaaggacgccatttccttggtctcatcttcaacgagttcaccaaccttaacttgctcaacctcaagca |
8913310 |
T |
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| Q |
107 |
aacaggcaattatgaccttgaccttaacgatcttctccatcagatcttaaacttcgcattgaagaaactcacatcgctcaatatctccaaccaatggacc |
206 |
Q |
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| T |
8913311 |
aacaggcaattatgaccttgaccttaacgatcttctccatcagatcttaaacttcgcattgaagaaactcacatcgctcaatatctccaaccaatggacc |
8913410 |
T |
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| Q |
207 |
tttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctcttaattg |
268 |
Q |
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| T |
8913411 |
tttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctctcaattg |
8913472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 6602684 - 6602771
Alignment:
| Q |
175 |
tcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctct |
262 |
Q |
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| T |
6602684 |
tcacatcgctcaatatctgcgataatcggacctttccttctaatgggttgcaagctttctctcaaaagattactactttgacctctct |
6602771 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 7132409 - 7132323
Alignment:
| Q |
168 |
aagaaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttg |
254 |
Q |
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| T |
7132409 |
aagaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg |
7132323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 7135332 - 7135246
Alignment:
| Q |
168 |
aagaaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttg |
254 |
Q |
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| T |
7135332 |
aagaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg |
7135246 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 7138255 - 7138169
Alignment:
| Q |
168 |
aagaaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttg |
254 |
Q |
| |
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| T |
7138255 |
aagaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg |
7138169 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 262
Target Start/End: Original strand, 10168999 - 10169096
Alignment:
| Q |
165 |
ttgaagaaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctct |
262 |
Q |
| |
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||||||||||||||||| ||| |||| ||| ||||||| ||| |||| || |||||||||| |||||| ||| |||| |||| ||||||||||||||| |
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| T |
10168999 |
ttgaagaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctct |
10169096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 262
Target Start/End: Original strand, 10176524 - 10176621
Alignment:
| Q |
165 |
ttgaagaaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctct |
262 |
Q |
| |
|
||||||||||||||||| ||| |||| ||| ||||||| ||| |||| || |||||||||| |||||| ||| |||| |||| ||||||||||||||| |
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| T |
10176524 |
ttgaagaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctct |
10176621 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 19467378 - 19467477
Alignment:
| Q |
163 |
cattgaagaaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctct |
262 |
Q |
| |
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||||||| ||||||||||| |||| |||||||||| | ||| |||| || |||||||||| |||||| || |||| |||||||||||||||||||| |
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| T |
19467378 |
cattgaaaaaactcacatctctcattatctccaacagacacaccattcccgcaaatgggttgcgagttttcactcaaaatattacaactttgacctctct |
19467477 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 264
Target Start/End: Original strand, 5766559 - 5766653
Alignment:
| Q |
170 |
gaaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctctta |
264 |
Q |
| |
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||||||||||||||||||| | ||||||||| | | ||||||||||||| |||| || ||| ||| | || ||||||||||||||||| |||| |
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| T |
5766559 |
gaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcactta |
5766653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 14004244 - 14004151
Alignment:
| Q |
171 |
aaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctctta |
264 |
Q |
| |
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|||||||||||||||||| | ||||||||| | | ||||||||||||| |||| || ||| ||| | || ||||||||||||||||| |||| |
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| T |
14004244 |
aaactcacatcgctcaatctttccaaccaacccatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcactta |
14004151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 262
Target Start/End: Original strand, 51763344 - 51763436
Alignment:
| Q |
170 |
gaaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctct |
262 |
Q |
| |
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|||||||||||| || ||| ||||||| || ||||||||| | |||||||||| |||||| || ||||||||||||||||||| ||||| |
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| T |
51763344 |
gaaactcacatcacttaatctctccaaacagcttacctttcctacaaatgggttgcgagttttttcacaaaagattacaactttgacatctct |
51763436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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