View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO6324B-LTR4-TNT-insertion-7 (Length: 283)
Name: SO6324B-LTR4-TNT-insertion-7
Description: SO6324B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO6324B-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 273
Target Start/End: Original strand, 27689831 - 27690094
Alignment:
| Q |
10 |
cactgaatactaattggagcatccatgagggagctaatagtttgtttattttactttttcataaaaagatgaatccataggagattgaatgaatggattt |
109 |
Q |
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| T |
27689831 |
cactgaatactaattggagcatccatgagggagctaatagtttgtttattttactttttcataaaaagatgaatccataggagattgaatgaatggattt |
27689930 |
T |
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| Q |
110 |
tgactgatataattcaccattgtgtgcatgtacaaagtgctatcaaatgaatttccataatacaaaaaataagactcaacattgaccacaaacgtacaaa |
209 |
Q |
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| T |
27689931 |
tgactgatataattcaccattgtgtgcatgtacaaagtgctatcaaatgaatttccataatacaaaaaataagactcaacattgaccacaaacgtacaaa |
27690030 |
T |
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| Q |
210 |
atataacaacattctttagttattttacatgaactctgtaattgtaacctgtttcatagcatta |
273 |
Q |
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| T |
27690031 |
atataacaacattctttagttattttacatgaactctgtaattgtaacctgtttcatagcatta |
27690094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 34578979 - 34578848
Alignment:
| Q |
18 |
actaattggagcatccatgagggagctaatagtttgtttattttac--tttttcataaaaagatgaatccataggagattgaatgaatggattttgactg |
115 |
Q |
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| T |
34578979 |
actaattagagcatccataaggg-gctaatagtttgtttattttaccttttttcacataaaaatgaatccata-aagat----tgaatggattttgactg |
34578886 |
T |
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| Q |
116 |
atataattcaccattgtgtgcatgtacaaagtgctatcaaa |
156 |
Q |
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| T |
34578885 |
a---cattcccagttgtgtgcatgcacaaagtgctatcaaa |
34578848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 34578622 - 34578590
Alignment:
| Q |
154 |
aaatgaatttccataatacaaaaaataagactc |
186 |
Q |
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| T |
34578622 |
aaatgaatttccataatacaataaataagactc |
34578590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 35086324 - 35086194
Alignment:
| Q |
154 |
aaatgaatttccataatacaaaaaataagactcaa--cattgaccaca---------aacgtacaaaatataacaacattctttagttattttacatgaa |
242 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||||||||||||| ||||||||||||| |
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| T |
35086324 |
aaatgaatttccataatacaaaaaataagactcaaaacattgaccacactttaaataaacctccaaaatataacaacattctttagctattttacatgaa |
35086225 |
T |
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| Q |
243 |
ctctgtaattgtaacctgtttcatagcatta |
273 |
Q |
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| T |
35086224 |
ctcggtaattgtaacctgtttcatggcatta |
35086194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 157
Target Start/End: Complemental strand, 35087601 - 35087486
Alignment:
| Q |
32 |
ccatgagggagctaatagtttgtttattttactttttcataaaaagatgaatccataggagattgaatgaatggattttgactgatataattcaccattg |
131 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| | |||| |
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| T |
35087601 |
ccataagggagctaatagtttgtttattttactttttcataaaaagatgaatcca---gagat----tgaatggattttgactgat---attcccaattg |
35087512 |
T |
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| Q |
132 |
tgtgcatgtacaaagtgctatcaaat |
157 |
Q |
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| T |
35087511 |
tgtgcatgtacaaattgcaatcaaat |
35087486 |
T |
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