View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO6324B-LTR4-TNT-insertion-8 (Length: 183)
Name: SO6324B-LTR4-TNT-insertion-8
Description: SO6324B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO6324B-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 4e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 39557251 - 39557091
Alignment:
| Q |
8 |
aatgtgaggtcttgcttgtactataagtggtaaattgttcatttggagtgtatatgtagggagtaatctgtctaatgtgggtcgactatttagtgtgtaa |
107 |
Q |
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| T |
39557251 |
aatgtgaggtcttgcttgtactataagtggtaaattgttcatttggagtgtatatgtagggagtaatctgtctaatgtgggtcgactatttagtgtgtaa |
39557152 |
T |
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| Q |
108 |
aatttgcaaattattaaatatatagttgggttgtatttaattaagttgggagtaatccctg |
168 |
Q |
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| T |
39557151 |
aatttgcaaattattaaatatatagttgggttgtatttaattaagttgggagtaatccctg |
39557091 |
T |
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