View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5668-1 (Length: 305)
Name: Solexa-NF5668-1
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-1 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 21550478 - 21550766
Alignment:
| Q |
1 |
cccatcaaatacaacattattatttaaatatattctatcatctaaatattaccttagatttctcatcaactaattgatcaacgtttacattttcttacta |
100 |
Q |
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| T |
21550478 |
cccatcaaatacaacattattatttaaagatattttatcatctaaatattaccttagatttctcatcaactaattgatcaacgtttacattttcttacta |
21550577 |
T |
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| Q |
101 |
gaataaaattgggagcaaaattaccatataattgcagtaataaattatgcaatctagcactatttattaattgtaaattacataccaaggcagataggac |
200 |
Q |
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| T |
21550578 |
gaataaaattgggagcaaaattaccatataattgcagtaataaattaagcaatctagcactatttattaattgtaaattacataccaaggcagataggac |
21550677 |
T |
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| Q |
201 |
actcaacattcttgcgtatttcagacatagtcaccctcacatatctgcaaatgaacaccaataggagaagtttacaagcattagattgt |
289 |
Q |
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| T |
21550678 |
actcaacattcttgcgtatttcagacatagtcaccctcacatatctgcaaatgaacaccaataggagaagtttacaaacattagattgt |
21550766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 27593463 - 27593423
Alignment:
| Q |
166 |
attaattgtaaattacataccaaggcagataggacactcaa |
206 |
Q |
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| T |
27593463 |
attaattataaattacataccaaggcaaatagggcactcaa |
27593423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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