View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5668-12 (Length: 91)

Name: Solexa-NF5668-12
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5668-12
Solexa-NF5668-12
[»] chr5 (3 HSPs)
chr5 (8-88)||(37704379-37704459)
chr5 (8-88)||(37437445-37437525)
chr5 (8-78)||(37698571-37698641)
[»] chr4 (1 HSPs)
chr4 (22-88)||(16841203-16841272)


Alignment Details
Target: chr5 (Bit Score: 81; Significance: 1e-38; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 37704459 - 37704379
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaa 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704459 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaa 37704379  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 6e-34
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 37437525 - 37437445
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaa 88  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37437525 tttggtccttgccccttagtttcaagttatgtttcctatataaatagaggctaatcatttggtatatcctaaatcatcaaa 37437445  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 37698641 - 37698571
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatccta 78  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37698641 tttggtcctttccccgtagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatccta 37698571  T

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Target: chr4 (Bit Score: 48; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 16841203 - 16841272
Alignment:
Q  22 cttagtttcaggttatgtttcctatataaata---gaggctaatcaattggtatatcctaaatcatcaaa 88  Q
    ||||||||||||||||||||||||||||||||   ||||||||||| |||||||||| ||||||||||||    
T  16841203 cttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaa 16841272  T

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