View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5668-24 (Length: 127)
Name: Solexa-NF5668-24
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 1e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 31553649 - 31553528
Alignment:
| Q |
6 |
caattacaagcatgtactctttccttaaactctcagtccattcatctggatcaaaactcatcagctgtttaactgtcagctcaaatgttatctgcaacaa |
105 |
Q |
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| T |
31553649 |
caattacaagcatgtactctttccttaaactctcagtccattcatctggatcaaaactcatcagctgtttaactgtcaactcaaatgttatctgcaacaa |
31553550 |
T |
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| Q |
106 |
aacaaatatccatcatcatcgt |
127 |
Q |
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| T |
31553549 |
aacaaatatccatcatcatcgt |
31553528 |
T |
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Target: chr5 (Bit Score: 56; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 35476134 - 35476051
Alignment:
| Q |
19 |
gtactctttccttaaactctcagtccattcatctggatcaaaactcatcagctgtttaactgtcagctcaaatgttatctgcaa |
102 |
Q |
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|||||||||||||| | |||||||||||||| |||||||||||||||||||||| || ||||||| |||||| ||||||||||| |
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| T |
35476134 |
gtactctttccttagagtctcagtccattcacctggatcaaaactcatcagctgcttcactgtcaactcaaacgttatctgcaa |
35476051 |
T |
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