View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5668-25 (Length: 132)

Name: Solexa-NF5668-25
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5668-25
Solexa-NF5668-25
[»] chr2 (4 HSPs)
chr2 (7-122)||(41650282-41650397)
chr2 (10-115)||(43227769-43227874)
chr2 (69-124)||(35021129-35021184)
chr2 (67-102)||(42006534-42006569)
[»] scaffold0633 (1 HSPs)
scaffold0633 (65-101)||(8943-8979)
[»] chr1 (1 HSPs)
chr1 (65-101)||(41666250-41666286)
[»] chr4 (3 HSPs)
chr4 (62-101)||(43365909-43365948)
chr4 (69-99)||(49888328-49888358)
chr4 (69-116)||(44363077-44363124)
[»] chr3 (3 HSPs)
chr3 (69-124)||(25189514-25189569)
chr3 (69-98)||(39450803-39450832)
chr3 (69-124)||(43071699-43071754)
[»] chr8 (1 HSPs)
chr8 (65-101)||(13267906-13267942)
[»] chr7 (1 HSPs)
chr7 (72-124)||(37327454-37327506)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 1e-54; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 41650282 - 41650397
Alignment:
Q  7 acattttttcctgagtgttttggtttccaattatggatttttatcttggttttgaatgtaacatgttttaaatgaagttttcaagagaattttctaacaa 106  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41650282 acattttttcctgagtgttttggtttccaattatgggtttttatcttggttttgaatgtaacatgttttaaatgaagttttcaagagaattttctaacaa 41650381  T
Q  107 ctttatcgacgttcat 122  Q
    |||||| |||||||||    
T  41650382 ctttattgacgttcat 41650397  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 43227874 - 43227769
Alignment:
Q  10 ttttttcct-gagtgttttggtttccaattatggatttttatcttggttttgaatgtaacatgttttaaatgaagttttcaagagaattttctaacaact 108  Q
    ||||||||| ||||||||| |||| || || |||||||| |||||||||||  || | |||||||||||||||||||||||||||||||||||||||| |    
T  43227874 ttttttccttgagtgttttagttttcagttgtggatttt-atcttggttttctatatcacatgttttaaatgaagttttcaagagaattttctaacaatt 43227776  T
Q  109 ttatcga 115  Q
    |||||||    
T  43227775 ttatcga 43227769  T

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Target: chr2; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 35021184 - 35021129
Alignment:
Q  69 atgttttaaatgaagttttcaagagaattttctaacaactttatcgacgttcatct 124  Q
    |||||||||||||||||||||||| |||||| |  ||| |||||||| ||| ||||    
T  35021184 atgttttaaatgaagttttcaagaaaattttgtcgcaattttatcgatgttgatct 35021129  T

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Target: chr2; HSP #4
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 42006569 - 42006534
Alignment:
Q  67 acatgttttaaatgaagttttcaagagaattttcta 102  Q
    ||||||||||||| |||||||||| |||||||||||    
T  42006569 acatgttttaaattaagttttcaaaagaattttcta 42006534  T

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Target: scaffold0633 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 8943 - 8979
Alignment:
Q  65 taacatgttttaaatgaagttttcaagagaattttct 101  Q
    |||||||||||||||||||||||||||| ||||||||    
T  8943 taacatgttttaaatgaagttttcaagaaaattttct 8979  T

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Target: chr1 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 41666286 - 41666250
Alignment:
Q  65 taacatgttttaaatgaagttttcaagagaattttct 101  Q
    |||||||||||||||||||||||||||| ||||||||    
T  41666286 taacatgttttaaatgaagttttcaagaaaattttct 41666250  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 43365909 - 43365948
Alignment:
Q  62 atgtaacatgttttaaatgaagttttcaagagaattttct 101  Q
    |||||||||||||||||||||||||| ||| |||||||||    
T  43365909 atgtaacatgttttaaatgaagtttttaagggaattttct 43365948  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 99
Target Start/End: Complemental strand, 49888358 - 49888328
Alignment:
Q  69 atgttttaaatgaagttttcaagagaatttt 99  Q
    |||||||||||||||||||||||||||||||    
T  49888358 atgttttaaatgaagttttcaagagaatttt 49888328  T

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Target: chr4; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 44363124 - 44363077
Alignment:
Q  69 atgttttaaatgaagttttcaagagaattttctaacaactttatcgac 116  Q
    ||||||||||||||||||||||| ||||||| | |||| || ||||||    
T  44363124 atgttttaaatgaagttttcaagggaattttgttacaatttcatcgac 44363077  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 25189514 - 25189569
Alignment:
Q  69 atgttttaaatgaagttttcaagagaattttctaacaactttatcgacgttcatct 124  Q
    ||||||||||||||||||||||||||||||  | |||| |||||| | ||||||||    
T  25189514 atgttttaaatgaagttttcaagagaatttcgttacaattttatcaatgttcatct 25189569  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 98
Target Start/End: Complemental strand, 39450832 - 39450803
Alignment:
Q  69 atgttttaaatgaagttttcaagagaattt 98  Q
    ||||||||||||||||||||||||||||||    
T  39450832 atgttttaaatgaagttttcaagagaattt 39450803  T

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Target: chr3; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 43071754 - 43071699
Alignment:
Q  69 atgttttaaatgaagttttcaagagaattttctaacaactttatcgacgttcatct 124  Q
    |||||||||| |||||||||||||||||||| | |||| || ||||| ||| ||||    
T  43071754 atgttttaaacgaagttttcaagagaattttgttacaatttcatcgatgttaatct 43071699  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 13267906 - 13267942
Alignment:
Q  65 taacatgttttaaatgaagttttcaagagaattttct 101  Q
    ||||||||||||||||||||||||||  |||||||||    
T  13267906 taacatgttttaaatgaagttttcaaaggaattttct 13267942  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 37327506 - 37327454
Alignment:
Q  72 ttttaaatgaagttttcaagagaattttctaacaactttatcgacgttcatct 124  Q
    |||||||||||||||||||||||||||| |  ||| |||||||| ||| ||||    
T  37327506 ttttaaatgaagttttcaagagaattttgttgcaattttatcgatgttaatct 37327454  T

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