View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5668-27 (Length: 186)

Name: Solexa-NF5668-27
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5668-27
Solexa-NF5668-27
[»] chr8 (3 HSPs)
chr8 (7-178)||(1846484-1846655)
chr8 (54-95)||(4297560-4297601)
chr8 (54-107)||(4619755-4619808)
[»] chr1 (10 HSPs)
chr1 (7-178)||(7891066-7891237)
chr1 (7-144)||(7888801-7888938)
chr1 (54-178)||(38138021-38138145)
chr1 (54-178)||(3300729-3300853)
chr1 (54-144)||(45983863-45983953)
chr1 (54-178)||(43044995-43045119)
chr1 (54-178)||(43066872-43066996)
chr1 (54-178)||(43083839-43083963)
chr1 (54-105)||(50912450-50912501)
chr1 (54-107)||(40034854-40034907)
[»] chr2 (3 HSPs)
chr2 (54-107)||(34690912-34690965)
chr2 (54-107)||(34713324-34713377)
chr2 (54-107)||(16232253-16232306)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 1846655 - 1846484
Alignment:
Q  7 acttgcctacgctcttggtgtttcacaaatgatctgctgctgtaacaagatggatgccactacacccaaatactccaaggataggtatgaacaaattgtg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1846655 acttgcctacgctcttggtgtttcacaaatgatctgctgctgtaacaagatggatgccactacacccaaatactccaaggataggtatgaacaaattgtg 1846556  T
Q  107 agtcaaatttcaccctttttgagcgaggttggctataacccaggtaaaattccttttatccctatctctggt 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1846555 agtcaaatttcaccctttttgagcgaggttggctataacccaggtaaaattccttttatccctatctctggt 1846484  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 4297601 - 4297560
Alignment:
Q  54 agatggatgccactacacccaaatactccaaggataggtatg 95  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  4297601 agatggatgccactacacccaaatactccatggataggtatg 4297560  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 4619808 - 4619755
Alignment:
Q  54 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 107  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| || ||||||    
T  4619808 agatggatgccactgcacccaaatactccaagtataggtatgaagaatttgtga 4619755  T

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Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 7 - 178
Target Start/End: Original strand, 7891066 - 7891237
Alignment:
Q  7 acttgcctacgctcttggtgtttcacaaatgatctgctgctgtaacaagatggatgccactacacccaaatactccaaggataggtatgaacaaattgtg 106  Q
    |||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7891066 acttgcattcgctcttggtgtttcacaaatgatctgctgttgtaacaagatggatgccactacacccaaatactccaaggataggtatgaacaaattgtg 7891165  T
Q  107 agtcaaatttcaccctttttgagcgaggttggctataacccaggtaaaattccttttatccctatctctggt 178  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  7891166 agtcaaatttcaccctttttgagtgaggttggctataacctaggtaaaattccttttatccctatctctggt 7891237  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 7888801 - 7888938
Alignment:
Q  7 acttgcctacgctcttggtgtttcacaaatgatctgctgctgtaacaagatggatgccactacacccaaatactccaaggataggtatgaacaaattgtg 106  Q
    |||||||| |||||| ||||||| | |||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||| ||||||||    
T  7888801 acttgccttcgctctcggtgtttaaaaaatgatctgctgctgcaacaagatggatgccactacacccatatactcctaggacaggtatgaagaaattgtg 7888900  T
Q  107 agtcaaatttcaccctttttgagcgaggttggctataa 144  Q
    | |||| |||||||||||||||| ||||||||||||||    
T  7888901 aatcaagtttcaccctttttgagagaggttggctataa 7888938  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 54 - 178
Target Start/End: Original strand, 38138021 - 38138145
Alignment:
Q  54 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 153  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||   || |||||||||||||||  || ||||||||||||| || | |    
T  38138021 agatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaattttcaccctttttgattgatgttggctataacctagatga 38138120  T
Q  154 aattccttttatccctatctctggt 178  Q
    |||||| ||| | || |||||||||    
T  38138121 aattccatttgttcccatctctggt 38138145  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 54 - 178
Target Start/End: Complemental strand, 3300853 - 3300729
Alignment:
Q  54 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 153  Q
    ||||||||||||||||||| || ||||| |||| |||||||||| |||||||||   || ||||| ||| |||||   ||||||||||||||||||  ||    
T  3300853 agatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaa 3300754  T
Q  154 aattccttttatccctatctctggt 178  Q
    |||||| ||| | || |||||||||    
T  3300753 aattccatttgttcccatctctggt 3300729  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 45983863 - 45983953
Alignment:
Q  54 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataa 144  Q
    ||||||||||||||||||| |||||||| | ||||||||||| | |||||||||| ||| ||| ||||| |||||   |||||||||||||    
T  45983863 agatggatgccactacacctaaatactctagggataggtatgtagaaattgtgaggcaagttttaccctgtttgaataaggttggctataa 45983953  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 178
Target Start/End: Complemental strand, 43045119 - 43044995
Alignment:
Q  54 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 153  Q
    |||||||||| ||||||||||| |||||||||| ||| |||||  |||||||||   || ||||| ||| |||||   ||||||||||||||||||  ||    
T  43045119 agatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaa 43045020  T
Q  154 aattccttttatccctatctctggt 178  Q
    |||||| ||| | || |||||||||    
T  43045019 aattccatttgttcccatctctggt 43044995  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 178
Target Start/End: Original strand, 43066872 - 43066996
Alignment:
Q  54 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 153  Q
    |||||||||| ||||||||||| |||||||||| ||| |||||  |||||||||   || ||||| ||| |||||   ||||||||||||||||||  ||    
T  43066872 agatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaa 43066971  T
Q  154 aattccttttatccctatctctggt 178  Q
    |||||| ||| | || |||||||||    
T  43066972 aattccatttgttcccatctctggt 43066996  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 178
Target Start/End: Complemental strand, 43083963 - 43083839
Alignment:
Q  54 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 153  Q
    |||||||||| ||||||||||| |||||||||| ||| |||||  |||||||||   || ||||| ||| |||||   ||||||||||||||||||  ||    
T  43083963 agatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaa 43083864  T
Q  154 aattccttttatccctatctctggt 178  Q
    |||||| ||| | || |||||||||    
T  43083863 aattccatttgttcccatctctggt 43083839  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 50912501 - 50912450
Alignment:
Q  54 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgt 105  Q
    |||||||||| ||||| |||||||||||||||| |||||||||| |||||||    
T  50912501 agatggatgctactactcccaaatactccaagggtaggtatgaagaaattgt 50912450  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 40034854 - 40034907
Alignment:
Q  54 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 107  Q
    |||||||||| ||||||||||||||||| |||| ||||| |||| || ||||||    
T  40034854 agatggatgcaactacacccaaatactctaagggtaggtttgaagaacttgtga 40034907  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 34690965 - 34690912
Alignment:
Q  54 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 107  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  34690965 agatggatgccattacacccaaatactccaaggataggtatgaactaattgtga 34690912  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 34713377 - 34713324
Alignment:
Q  54 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 107  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  34713377 agatggatgccattacacccaaatactccaaggataggtatgaactaattgtga 34713324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 16232306 - 16232253
Alignment:
Q  54 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 107  Q
    ||||| ||||||||||||| |||||||||||||| || ||||||  ||||||||    
T  16232306 agatgaatgccactacaccgaaatactccaaggacagatatgaagtaattgtga 16232253  T

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