View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5668-35 (Length: 143)
Name: Solexa-NF5668-35
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-35 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 137; Significance: 6e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 6e-72
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 34759825 - 34759965
Alignment:
| Q |
3 |
caaaggagccagcaataacccatatctgtgacaagctaaattcatatccatctgttacatgaggtgcccacacatttatatttgcctttgctccaaagta |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34759825 |
caaaggagccagcaataacccatatctgtgacaagctaaattcatatccatctgttacatgaggtgcccacacatttatgtttgcctttgctccaaagta |
34759924 |
T |
|
| Q |
103 |
ttgatttccatttacaaaaagaattgcatgctgtaataaga |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34759925 |
ttgatttccatttacaaaaagaattgcatgctgtaataaga |
34759965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 43729054 - 43729184
Alignment:
| Q |
11 |
ccagcaataacccatatctgtgacaagctaaattcatatccatctgttacatgaggtgcccacacatttatatttgcctttgctccaaagtattgatttc |
110 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||||||||| ||| ||||| |||| |||||||||||| |||| ||||||||| ||||||| | || |
|
|
| T |
43729054 |
ccagcaataacccatatttgtgataagctgaattcatattgatcagttacccttggtgtccacacatttatgcttgcttttgctccatagtattgttctc |
43729153 |
T |
|
| Q |
111 |
catttacaaaaagaattgcatgctgtaataa |
141 |
Q |
| |
|
|||||||||||| || ||||||||| ||||| |
|
|
| T |
43729154 |
catttacaaaaacaactgcatgctgcaataa |
43729184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 30928677 - 30928769
Alignment:
| Q |
20 |
acccatatctgtgacaagctaaattcatatccatctgttacatgaggtgcccacacatttatatttgcctttgctccaaagtattgatttcca |
112 |
Q |
| |
|
|||||||| || |||||||| ||||||| | ||||| |||||| || ||||||| |||||| | |||||||||||| ||||| ||| |||| |
|
|
| T |
30928677 |
acccatatttgagacaagctgaattcattttcatcttctacatgtggagcccacaaatttattgtagcctttgctccatagtatcgatctcca |
30928769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University