View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5668-37 (Length: 127)
Name: Solexa-NF5668-37
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-37 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 5e-57; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 8379919 - 8379800
Alignment:
| Q |
8 |
atacctacagcaactcaaaggaggatgcatgaaattgaaaaagatatagattcttctcttagatatataattaacaaaagagagaaagcaatgaaggcag |
107 |
Q |
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| T |
8379919 |
atacctacagctactcaaaggaggatgcatgaaattgaaaaagatatagattcttctcttagatatataattaacaaaagagagaaagcaatgaaggcag |
8379820 |
T |
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| Q |
108 |
gcgaagcaactgagaatgac |
127 |
Q |
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| T |
8379819 |
gtgaagcaactgagaatgac |
8379800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 23768032 - 23768087
Alignment:
| Q |
72 |
atataattaacaaaagagagaaagcaatgaaggcaggcgaagcaactgagaatgac |
127 |
Q |
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| T |
23768032 |
atataattaacaagagggagaaagcaataaaggcaggtgaagccactgagaatgac |
23768087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 23784039 - 23783984
Alignment:
| Q |
72 |
atataattaacaaaagagagaaagcaatgaaggcaggcgaagcaactgagaatgac |
127 |
Q |
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| T |
23784039 |
atataattaacaagagggaaaaagcaattaaggcaggtgaagccactgagaatgac |
23783984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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