View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5668-39 (Length: 127)
Name: Solexa-NF5668-39
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-39 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 3e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 43633508 - 43633389
Alignment:
| Q |
8 |
cagcataactaggatcagttaatatttcttgatacctgaggaatacatgcataacaaataaaacacccactcaattagattgaaatcaagccatcaaaca |
107 |
Q |
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| T |
43633508 |
cagcataactaggatcagttaaaatttcttgatacctgaggaatacatgcataacaaataaaacacccactcaattagattgaaatcaagccatcaaaca |
43633409 |
T |
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| Q |
108 |
acaagagcacaccacaagat |
127 |
Q |
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| T |
43633408 |
acaagagaatatcacaagat |
43633389 |
T |
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Target: chr4 (Bit Score: 43; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 42961733 - 42961675
Alignment:
| Q |
8 |
cagcataactaggatcagttaatatttcttgatacctgaggaatacatgcataacaaat |
66 |
Q |
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| T |
42961733 |
cagcataactaggatcagttaaaatttcttgatacctgaggaacacagacataacaaat |
42961675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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