View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5668-41 (Length: 141)
Name: Solexa-NF5668-41
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-41 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 4e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 31553170 - 31553310
Alignment:
| Q |
1 |
agaggtgtatggcatgcatatgtatgaatatatgaaaagacatgtttaaaaaagaaggggcttcttttgtttccttctttaatgatactgctactatata |
100 |
Q |
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| T |
31553170 |
agaggtgtatggcatgcatatgtatgaatatatgaaaagacatgtttaaaaaagaaggggcttcttttgtttccttctttaataatactgctcctatatt |
31553269 |
T |
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| Q |
101 |
tttttgtattcccttaattgctaaaaatgtttaggaatatg |
141 |
Q |
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| T |
31553270 |
tttttgtattcccttaattgctaaaaatgtttaggaatatg |
31553310 |
T |
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