View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5668-43 (Length: 299)
Name: Solexa-NF5668-43
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-43 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 47 - 292
Target Start/End: Original strand, 34922438 - 34922697
Alignment:
| Q |
47 |
ctgctttcgaactttagcagcagcattattatgctgtcgacgtttagcgatgacaatatgaataagctccaccagcttcttctgctatatcttagagatt |
146 |
Q |
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| T |
34922438 |
ctgctttcgaactttagcagcagcattattatgctgtcgacgtttaacgatgacaatatgaataagctccaccagcttcttctgc--tatcttagagatt |
34922535 |
T |
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| Q |
147 |
aatattgtagaactcaaataagaacaaagagcaaagaaactaaaattgtgtaccttg-------------atcttagc--tgccagaaaaaacttgcctc |
231 |
Q |
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| T |
34922536 |
aatattgtagaactcaaataagaacaaagaacaaagaaactaaaattgtgaaacttgaataaaaaaaactatgtcaacattgccagaaaaaacttgcctc |
34922635 |
T |
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| Q |
232 |
gcttccaattcttctaatctgagtc-ttaggcttattcttccctctttctatttcacaccac |
292 |
Q |
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| T |
34922636 |
gcttccaattcttctaatctgagtctttaggcttattcttccctctttttatttcacaccac |
34922697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 34922363 - 34922424
Alignment:
| Q |
2 |
cacagacttcagattttttatgtcctccaactctttcttctcttgctgctttcgaactttag |
63 |
Q |
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| T |
34922363 |
cacagacttcagattttttatgtcctccaactctttcttctcctgctgctttcgaactttag |
34922424 |
T |
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