View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5668-45 (Length: 140)

Name: Solexa-NF5668-45
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5668-45
Solexa-NF5668-45
[»] chr8 (4 HSPs)
chr8 (3-140)||(1846229-1846366)
chr8 (2-140)||(4619428-4619566)
chr8 (13-121)||(4787832-4787940)
chr8 (3-46)||(4297222-4297265)
[»] chr1 (10 HSPs)
chr1 (3-140)||(7891355-7891492)
chr1 (3-136)||(45984103-45984236)
chr1 (25-140)||(38138263-38138378)
chr1 (3-136)||(43083584-43083717)
chr1 (33-140)||(50912149-50912256)
chr1 (7-136)||(43067118-43067247)
chr1 (3-136)||(3300474-3300607)
chr1 (7-136)||(43044744-43044873)
chr1 (28-124)||(43076977-43077073)
chr1 (3-119)||(40035117-40035233)
[»] chr4 (2 HSPs)
chr4 (3-136)||(4231205-4231338)
chr4 (3-121)||(19964974-19965092)
[»] chr2 (4 HSPs)
chr2 (2-136)||(34690585-34690719)
chr2 (2-136)||(34712997-34713131)
chr2 (25-136)||(33860596-33860708)
chr2 (34-124)||(16231958-16232048)
[»] chr5 (1 HSPs)
chr5 (32-140)||(16348916-16349024)
[»] chr6 (1 HSPs)
chr6 (4-128)||(7529674-7529798)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 2e-72; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 3 - 140
Target Start/End: Original strand, 1846229 - 1846366
Alignment:
Q  3 cacagacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattcca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1846229 cacagacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattcca 1846328  T
Q  103 attcctccaatcttgtagacatcttgaagtggtaatcg 140  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1846329 attcctccaatcttgtagacatcttgaagtggtaatcg 1846366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 4619428 - 4619566
Alignment:
Q  2 gcacagacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattcc 101  Q
    |||||||||| ||||||| ||| |||||| | ||||||||||||| || ||||||||||||||||| ||| | |||||| | ||||||||||||| ||||    
T  4619428 gcacagactttacttcagcttgcagcccaatcggggcaaaagtcaccatcattccaggtttcaagacaccggtctcaacacatcccacaggcacagttcc 4619527  T
Q  102 aattcctccaatcttgtagacatcttgaagtggtaatcg 140  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  4619528 aattcctccaatcttgtagacatcccgaagtggtaatcg 4619566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 4787940 - 4787832
Alignment:
Q  13 acttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattccaattcctccaa 112  Q
    |||||| |||| ||||||||||||||||||||||    |||||||||   ||||  ||||| ||| || |||||||||| ||||| ||| ||||||||||    
T  4787940 acttcaatttgcagcccagttggggcaaaagtcacagacattccagggcacaagcaaccagtctcgacacgtcccacagacacaactccgattcctccaa 4787841  T
Q  113 tcttgtaga 121  Q
    |||||||||    
T  4787840 tcttgtaga 4787832  T

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Target: chr8; HSP #4
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 4297222 - 4297265
Alignment:
Q  3 cacagacttcacttcagtttggagcccagttggggcaaaagtca 46  Q
    |||||| || ||||||| ||| ||||||||||||||||||||||    
T  4297222 cacagatttgacttcagcttgcagcccagttggggcaaaagtca 4297265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 2e-72; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 7891492 - 7891355
Alignment:
Q  3 cacagacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattcca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7891492 cacagacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattcca 7891393  T
Q  103 attcctccaatcttgtagacatcttgaagtggtaatcg 140  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7891392 attcctccaatcttgtagacatcttgaagtggtaatcg 7891355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 45984236 - 45984103
Alignment:
Q  3 cacagacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattcca 102  Q
    ||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| ||||||  ||||| |||||| ||||||||||||||| ||||     
T  45984236 cacagacttcacttcagcttgcagcccagttgcggcaaaagtcagcaccattccagggttcaaggaaccagtctcaacacgtcccacaggcacagttccg 45984137  T
Q  103 attcctccaatcttgtagacatcttgaagtggta 136  Q
    ||||||||||||||||||||||| ||||||||||    
T  45984136 attcctccaatcttgtagacatcctgaagtggta 45984103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 38138378 - 38138263
Alignment:
Q  25 agcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattccaattcctccaatcttgtagacat 124  Q
    |||||||||||||||||||||| | ||||||| |||||||||| |||   |||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  38138378 agcccagttggggcaaaagtcaccgccattcctggtttcaagacaccgctctcaacccgtcccacaggcacagttccaattcctccaatcttgtagacat 38138279  T
Q  125 cttgaagtggtaatcg 140  Q
    | ||||||||||||||    
T  38138278 cctgaagtggtaatcg 38138263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 43083584 - 43083717
Alignment:
Q  3 cacagacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattcca 102  Q
    ||||||||| |||||||||   || ||||| ||||||||||| |  |||||||||||||| | || ||||| ||| || || |||||||||||| |||||    
T  43083584 cacagacttgacttcagttgtcagtccagtaggggcaaaagtgataaccattccaggttttatgacaccagtctcgacacgccccacaggcacagttcca 43083683  T
Q  103 attcctccaatcttgtagacatcttgaagtggta 136  Q
    ||||||||||||||||||||||||||||||||||    
T  43083684 attcctccaatcttgtagacatcttgaagtggta 43083717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 50912149 - 50912256
Alignment:
Q  33 tggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattccaattcctccaatcttgtagacatcttgaagt 132  Q
    |||||||||||||| |||||||||| ||||||||| ||| | |||||  ||||||||||| |||||||||||| ||||||||||||||||| | ||||||    
T  50912149 tggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagacaacctgaagt 50912248  T
Q  133 ggtaatcg 140  Q
    ||||||||    
T  50912249 ggtaatcg 50912256  T

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Target: chr1; HSP #6
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 43067247 - 43067118
Alignment:
Q  7 gacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattccaattc 106  Q
    ||||| |||||||||   || ||||| ||||||||||| |  |||||||||||||| | || ||||| ||| || || |||||||||||| |||||||||    
T  43067247 gacttgacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagttccaattc 43067148  T
Q  107 ctccaatcttgtagacatcttgaagtggta 136  Q
    ||||||||||||||||||||||||||||||    
T  43067147 ctccaatcttgtagacatcttgaagtggta 43067118  T

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Target: chr1; HSP #7
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 3300474 - 3300607
Alignment:
Q  3 cacagacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattcca 102  Q
    |||||||||||||||||||   || ||||| ||||||||||| |  |||||||||||||| | || ||||| ||| || || |||||||||||| | |||    
T  3300474 cacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtccca 3300573  T
Q  103 attcctccaatcttgtagacatcttgaagtggta 136  Q
    ||||||||||||||||||||||| ||||| ||||    
T  3300574 attcctccaatcttgtagacatcctgaagcggta 3300607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 43044744 - 43044873
Alignment:
Q  7 gacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattccaattc 106  Q
    ||||| |||||||||   || ||||| ||||||||||| |  |||||||||||||| | || ||||| ||| || || |||||||||||| |||||||||    
T  43044744 gacttgacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagttccaattc 43044843  T
Q  107 ctccaatcttgtagacatcttgaagtggta 136  Q
    ||||||||||||||||||| ||||||||||    
T  43044844 ctccaatcttgtagacatcctgaagtggta 43044873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 43077073 - 43076977
Alignment:
Q  28 ccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattccaattcctccaatcttgtagacat 124  Q
    ||||| ||||||||||||| |||||||||||||||||||| ||||| |||||| ||| ||||||| ||| |||||||||||| || |||||||||||    
T  43077073 ccagtaggggcaaaagtcaccaccattccaggtttcaagacaccagtctcaacacgtgccacaggtacagttccaattcctctaaacttgtagacat 43076977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 40035233 - 40035117
Alignment:
Q  3 cacagacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattcca 102  Q
    ||||||| ||||||||||||| | ||||||||||||||||||||   ||||||| |||||||||| ||||| |  ||| || || |||||||| | ||||    
T  40035233 cacagacctcacttcagtttgcaccccagttggggcaaaagtcacagccattcctggtttcaagacaccagtcataacacgaccaacaggcacgactcca 40035134  T
Q  103 attcctccaatcttgta 119  Q
    |||||||||||| ||||    
T  40035133 attcctccaatcatgta 40035117  T

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Target: chr4 (Bit Score: 82; Significance: 4e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 4231205 - 4231338
Alignment:
Q  3 cacagacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattcca 102  Q
    ||||||||| ||||||||||| || |||||||| |||||||||| ||||||||||||||||| | |||||| |||||| ||||||||||| ||| |||||    
T  4231205 cacagacttgacttcagtttgcagtccagttggagcaaaagtcaccaccattccaggtttcatggtaccagtctcaacacgtcccacaggaacagttcca 4231304  T
Q  103 attcctccaatcttgtagacatcttgaagtggta 136  Q
    ||||||||||||||||||||||| ||||| ||||    
T  4231305 attcctccaatcttgtagacatcctgaagaggta 4231338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 19965092 - 19964974
Alignment:
Q  3 cacagacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattcca 102  Q
    ||||||||||||||    ||| |||||||||||||||||| ||| |||||| |||||| |||||  ||||| | |||  ||||||||||||||| ||||     
T  19965092 cacagacttcactttgcgttgcagcccagttggggcaaaattcatcaccatcccaggtgtcaagtaaccagtcacaatacgtcccacaggcacatttccg 19964993  T
Q  103 attcctccaatcttgtaga 121  Q
    |||||||||| ||||||||    
T  19964992 attcctccaaccttgtaga 19964974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 3e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 34690585 - 34690719
Alignment:
Q  2 gcacagacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattcc 101  Q
    |||||||||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||| ||||| ||| ||||    
T  34690585 gcacagacttaactccagattgcagcccagttggggcaaaagtcagcaccattccaggtttcaacacaccagtctcaacacgtccgacaggtacagttcc 34690684  T
Q  102 aattcctccaatcttgtagacatcttgaagtggta 136  Q
    ||  ||||||||||||||||||| |||||||||||    
T  34690685 aacacctccaatcttgtagacatgttgaagtggta 34690719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 34712997 - 34713131
Alignment:
Q  2 gcacagacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattcc 101  Q
    |||||||||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||| ||||| ||| ||||    
T  34712997 gcacagacttaactccagattgcagcccagttggggcaaaagtcagcaccattccaggtttcaacacaccagtctcaacacgtccgacaggtacagttcc 34713096  T
Q  102 aattcctccaatcttgtagacatcttgaagtggta 136  Q
    ||  ||||||||||||||||||| |||||||||||    
T  34713097 aacacctccaatcttgtagacatgttgaagtggta 34713131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 33860596 - 33860708
Alignment:
Q  25 agcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattccaattcctccaatc-ttgtagaca 123  Q
    |||||||||||||||||||||| | |||||||||||||||||  ||||| | |||| ||||| ||| ||||| |||| |||||||||||| |||||||||    
T  33860596 agcccagttggggcaaaagtcaccgccattccaggtttcaagtgaccagtcacaacacgtcctacatgcacatttccgattcctccaatctttgtagaca 33860695  T
Q  124 tcttgaagtggta 136  Q
     | ||||||||||    
T  33860696 ccatgaagtggta 33860708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 16231958 - 16232048
Alignment:
Q  34 ggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattccaattcctccaatcttgtagacat 124  Q
    |||||||||||||| |||||||| || || || |  |||| |||||| ||||||||||| ||| ||||||| |||||||||||||||||||    
T  16231958 ggggcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacat 16232048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 16348916 - 16349024
Alignment:
Q  32 ttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattccaattcctccaatcttgtagacatcttgaag 131  Q
    |||||| |||||||| |||||||||||||||||||| ||||| |   || | |||  ||| || |  ||||||||||||||||||||||||| | |||||    
T  16348916 ttggggaaaaagtcaccaccattccaggtttcaagacaccagtcctgacacatcctgcagccaaagctccaattcctccaatcttgtagacaccctgaag 16349015  T
Q  132 tggtaatcg 140  Q
    |||||||||    
T  16349016 tggtaatcg 16349024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 7529798 - 7529674
Alignment:
Q  4 acagacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattccaa 103  Q
    |||||||| |||||||||   || ||||| ||  |||||||||  ||||| || || ||||  ||||| | |||||| ||||| || |||||| ||||||    
T  7529798 acagacttaacttcagttgttagaccagtgggtccaaaagtcacaaccataccgggcttcacaataccggtctcaacacgtccgactggcacagttccaa 7529699  T
Q  104 ttcctccaatcttgtagacatcttg 128  Q
    | || ||||||||||| ||||||||    
T  7529698 taccaccaatcttgtaaacatcttg 7529674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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