View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5668-51 (Length: 179)
Name: Solexa-NF5668-51
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-51 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 65; Significance: 8e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 38051672 - 38051768
Alignment:
| Q |
85 |
cttatcatgaagaaagaactgacattgtgttgtaacaataccgaaaacaacaagatgagacgctgctatat-at-gtgataggcatcaatatgattc |
179 |
Q |
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| T |
38051672 |
cttatcatgaagaaagaactgaccttgtgttgtaacaataccgaaaacaacaagatcagacgctgctatgtgatactgataggcatcaatatgattc |
38051768 |
T |
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Target: chr5; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 38051445 - 38051523
Alignment:
| Q |
8 |
tatttgagaagcgtgatattgcaactaaattaaggcaccattcatagtattgatttaattcccttggctattcattactta |
88 |
Q |
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| T |
38051445 |
tatttgagaagcgtgacattgcaactaaattaaggcaccattcatagtattgatttaattccctt--caattcattactta |
38051523 |
T |
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