View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5668-54 (Length: 127)
Name: Solexa-NF5668-54
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-54 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 5e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 51273697 - 51273578
Alignment:
| Q |
8 |
caaagtatggtgatgaagaattgatcgttcaatgaattggagctgtgagattaaagctaagaaacgctttgagattgatttgcaactcactgctgtcttg |
107 |
Q |
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| T |
51273697 |
caaagtatggtgatgaagaattgatcgttcaatgaattggagctgtgagattaaagctaagaaacgctttgagatggatttgcaactcactgctgtcttg |
51273598 |
T |
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| Q |
108 |
tatgaaacacgactccatat |
127 |
Q |
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| T |
51273597 |
tacgaaacacgactccatat |
51273578 |
T |
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Target: chr6 (Bit Score: 57; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 14907773 - 14907657
Alignment:
| Q |
10 |
aagtatggtgatgaagaattgatcgttcaatgaattggagctgtgagatt-aaagctaagaaacgctttgagattgatttgcaactcactgctgtcttgt |
108 |
Q |
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| T |
14907773 |
aagtatggtgatgaataatggatcattcaatgaattggagatttgaaatttaaagctaagatgcgctttgagatggatttgtaactcactgatgttttgt |
14907674 |
T |
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| Q |
109 |
atgaaacacgactccat |
125 |
Q |
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| T |
14907673 |
atgaaacacgaatccat |
14907657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 5051679 - 5051790
Alignment:
| Q |
15 |
tggtgatgaagaattgatcgttcaatgaattggagctgtgagattaaagctaagaaacgctttgagattgatttgcaactcactgctgtcttgtatgaaa |
114 |
Q |
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| T |
5051679 |
tggtgatgaagaactggccgttcattgaattggagctgtgagattattgctaagaagcgctttgcgatggatttgcatctcactcctgtcttgtatg-ga |
5051777 |
T |
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| Q |
115 |
cacgactccatat |
127 |
Q |
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| T |
5051778 |
cacgactccatat |
5051790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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