View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5668-55 (Length: 147)
Name: Solexa-NF5668-55
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-55 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 8e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 24729987 - 24729841
Alignment:
| Q |
1 |
cacagatgcatacagaacacacagcttcatgcattcaaattactgaaaaataaagaaacaat----taatttttctggtgtttatccaatatggttctga |
96 |
Q |
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| T |
24729987 |
cacagatgcatacagaacacacagcttcatgcattcaaattactgaaaaataaagaaacaatcaacaaagttttctggtgtttatccaatatggttttga |
24729888 |
T |
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| Q |
97 |
tacaatcaatgttcttgactagaagaaacaatctcaataaaattaaaacct |
147 |
Q |
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| T |
24729887 |
ta----caatgttcttgactagaagaaacaatctcaataaaattaaaacct |
24729841 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 9634336 - 9634401
Alignment:
| Q |
78 |
ttatccaatatggttctgatacaatcaatgttcttgactagaagaaacaatctcaataaaattaaaacct |
147 |
Q |
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| T |
9634336 |
ttatccaatatggttctgatacaat----gttattgactataagaaacaatctgaataaaattaaaacct |
9634401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31572250 - 31572298
Alignment:
| Q |
1 |
cacagatgcatacagaacacacagcttcatgcattcaaattactgaaaa |
49 |
Q |
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| T |
31572250 |
cacagatgcatactgaacacacaacttcatgcattccaattattgaaaa |
31572298 |
T |
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