View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5668-59 (Length: 222)
Name: Solexa-NF5668-59
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-59 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 1e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 1e-85
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 35649611 - 35649812
Alignment:
| Q |
7 |
acttgtcaatcttaccctcaatccaaacacgcaacagtcactctaactgaatcttaaatttgaagcttctacatcaaaatgtaannnnnnnnatttgaaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35649611 |
acttgtcaatcttaccctcaatccaaacacgcaacagtcactctaactgaatcttaaatttgaagcttctacatcaaaatgtaattttttt-atttgaaa |
35649709 |
T |
|
| Q |
107 |
gttattgtttkgctcacttacaggtgaatgctttaacacgaatcatttttatgatgtcttacttttaaccaacatcaattaatttatatcaatttccgtc |
206 |
Q |
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|||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35649710 |
gttattgtttggctcacttttaggtgaatgctttaacacaaatcatttttatgatgtcttacttttaaccaacatcaattaatttatatcaatttccgtc |
35649809 |
T |
|
| Q |
207 |
cct |
209 |
Q |
| |
|
||| |
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| T |
35649810 |
cct |
35649812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 1e-85
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 35677691 - 35677892
Alignment:
| Q |
7 |
acttgtcaatcttaccctcaatccaaacacgcaacagtcactctaactgaatcttaaatttgaagcttctacatcaaaatgtaannnnnnnnatttgaaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35677691 |
acttgtcaatcttaccctcaatccaaacacgcaacagtcactctaactgaatcttaaatttgaagcttctacatcaaaatgtaattttttt-atttgaaa |
35677789 |
T |
|
| Q |
107 |
gttattgtttkgctcacttacaggtgaatgctttaacacgaatcatttttatgatgtcttacttttaaccaacatcaattaatttatatcaatttccgtc |
206 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35677790 |
gttattgtttggctcacttttaggtgaatgctttaacacaaatcatttttatgatgtcttacttttaaccaacatcaattaatttatatcaatttccgtc |
35677889 |
T |
|
| Q |
207 |
cct |
209 |
Q |
| |
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||| |
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|
| T |
35677890 |
cct |
35677892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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