View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5668-65 (Length: 151)

Name: Solexa-NF5668-65
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5668-65
Solexa-NF5668-65
[»] chr1 (10 HSPs)
chr1 (38-151)||(21720735-21720848)
chr1 (58-144)||(23475395-23475481)
chr1 (38-91)||(21981356-21981409)
chr1 (38-151)||(21218873-21218986)
chr1 (74-140)||(20408507-20408573)
chr1 (74-151)||(18621473-18621550)
chr1 (38-147)||(24243807-24243915)
chr1 (97-151)||(21682144-21682198)
chr1 (38-111)||(13222252-13222325)
chr1 (38-90)||(21423820-21423872)
[»] chr7 (11 HSPs)
chr7 (38-150)||(11773553-11773665)
chr7 (38-140)||(3169790-3169892)
chr7 (38-140)||(8326712-8326814)
chr7 (38-125)||(29740762-29740849)
chr7 (55-151)||(26007165-26007262)
chr7 (38-146)||(13146381-13146489)
chr7 (38-105)||(8323512-8323579)
chr7 (38-115)||(16197495-16197572)
chr7 (107-140)||(20910117-20910150)
chr7 (75-151)||(13761278-13761354)
chr7 (65-124)||(13452095-13452154)
[»] chr8 (9 HSPs)
chr8 (38-151)||(18830187-18830300)
chr8 (38-151)||(23241666-23241779)
chr8 (38-151)||(23539832-23539945)
chr8 (38-151)||(24625355-24625467)
chr8 (58-140)||(16090870-16090951)
chr8 (38-91)||(23542981-23543035)
chr8 (40-91)||(17610261-17610312)
chr8 (38-101)||(22853310-22853373)
chr8 (38-81)||(23811234-23811277)
[»] chr3 (18 HSPs)
chr3 (38-151)||(25680352-25680465)
chr3 (38-151)||(25688656-25688769)
chr3 (38-151)||(16218490-16218603)
chr3 (41-151)||(13440606-13440716)
chr3 (38-151)||(5347884-5347996)
chr3 (41-150)||(19659383-19659492)
chr3 (38-137)||(19631473-19631572)
chr3 (38-140)||(2546626-2546728)
chr3 (69-151)||(10934969-10935051)
chr3 (38-151)||(15540478-15540591)
chr3 (40-151)||(4814363-4814475)
chr3 (38-113)||(10726604-10726679)
chr3 (38-91)||(4657262-4657316)
chr3 (57-151)||(11832526-11832617)
chr3 (38-91)||(27052956-27053008)
chr3 (38-83)||(11677354-11677399)
chr3 (38-151)||(30098320-30098432)
chr3 (75-115)||(1276503-1276543)
[»] scaffold0004 (1 HSPs)
scaffold0004 (38-151)||(370871-370985)
[»] chr4 (11 HSPs)
chr4 (38-140)||(15692664-15692766)
chr4 (38-151)||(21982448-21982560)
chr4 (41-151)||(15711908-15712018)
chr4 (38-138)||(16571689-16571790)
chr4 (38-146)||(11776701-11776809)
chr4 (38-151)||(28801291-28801401)
chr4 (38-134)||(9253166-9253262)
chr4 (38-134)||(9273137-9273233)
chr4 (38-134)||(19890097-19890193)
chr4 (38-115)||(9245442-9245519)
chr4 (38-134)||(17960364-17960460)
[»] scaffold0185 (1 HSPs)
scaffold0185 (38-151)||(754-867)
[»] chr2 (6 HSPs)
chr2 (38-140)||(28774736-28774839)
chr2 (38-150)||(21654696-21654808)
chr2 (38-151)||(27354017-27354129)
chr2 (41-101)||(18995781-18995841)
chr2 (38-82)||(29744271-29744315)
chr2 (38-115)||(34896302-34896379)
[»] scaffold0964 (1 HSPs)
scaffold0964 (41-151)||(2658-2768)
[»] scaffold0111 (1 HSPs)
scaffold0111 (41-151)||(29755-29865)
[»] chr6 (17 HSPs)
chr6 (38-151)||(19724930-19725044)
chr6 (38-140)||(14566124-14566226)
chr6 (38-133)||(23293784-23293879)
chr6 (50-148)||(13562724-13562822)
chr6 (38-151)||(16308175-16308287)
chr6 (38-135)||(19969262-19969357)
chr6 (38-114)||(10975425-10975501)
chr6 (38-135)||(19980701-19980799)
chr6 (38-151)||(14894282-14894395)
chr6 (38-151)||(18557882-18557993)
chr6 (38-137)||(19976823-19976922)
chr6 (38-104)||(12347044-12347110)
chr6 (40-105)||(14355561-14355626)
chr6 (38-112)||(17925197-17925271)
chr6 (38-84)||(23301094-23301140)
chr6 (41-113)||(23224249-23224321)
chr6 (38-137)||(18028058-18028157)
[»] scaffold0014 (1 HSPs)
scaffold0014 (41-140)||(202438-202537)
[»] scaffold0228 (3 HSPs)
scaffold0228 (38-140)||(6551-6652)
scaffold0228 (38-140)||(14133-14234)
scaffold0228 (38-140)||(24085-24186)
[»] scaffold0039 (1 HSPs)
scaffold0039 (38-151)||(8355-8469)
[»] chr5 (7 HSPs)
chr5 (38-151)||(19315959-19316072)
chr5 (38-150)||(17364571-17364682)
chr5 (39-140)||(17170074-17170174)
chr5 (38-139)||(10176251-10176351)
chr5 (38-150)||(20728210-20728322)
chr5 (38-102)||(26728257-26728320)
chr5 (45-140)||(24194720-24194814)
[»] scaffold0196 (1 HSPs)
scaffold0196 (74-140)||(17969-18035)
[»] scaffold0753 (1 HSPs)
scaffold0753 (38-115)||(1499-1576)
[»] scaffold0412 (1 HSPs)
scaffold0412 (38-91)||(3768-3821)
[»] scaffold0416 (1 HSPs)
scaffold0416 (38-134)||(15360-15456)
[»] scaffold0417 (1 HSPs)
scaffold0417 (41-150)||(4111-4220)
[»] scaffold0007 (1 HSPs)
scaffold0007 (38-137)||(204330-204428)
[»] scaffold0040 (1 HSPs)
scaffold0040 (38-84)||(42595-42641)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 1e-48; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 21720848 - 21720735
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    |||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21720848 aagttactagtgagttggggtaattaattagagacagaaattattcattattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 21720749  T
Q  138 attcagctcattaa 151  Q
    |||||||| |||||    
T  21720748 attcagctaattaa 21720735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 23475395 - 23475481
Alignment:
Q  58 taattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaatattcagc 144  Q
    |||||| ||||| || ||||||||||||||||||||||||| |||||  ||||||||| || ||||||||| |||||||||||||||    
T  23475395 taattacttagaaacggtaattattcgttattttggcggttgaagtgtttagtaactttggtgaattagttcgtaagaatattcagc 23475481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 21981409 - 21981356
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttatttt 91  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  21981409 aagttactagtgagttatggtaagtaattagagacagtaattattcgttatttt 21981356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 21218873 - 21218986
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    ||||||||| | || | |||| |||| | |||||| ||||||||||||||||||| |  ||||||||  |||||| || || ||||||||||||||||||    
T  21218873 aagttactaatcagatggggtgattattaagagacggtaattattcgttattttgacaatttaagtgtgtagtaattttggtgaattagttggtaagaat 21218972  T
Q  138 attcagctcattaa 151  Q
    ||| || |||||||    
T  21218973 attaagttcattaa 21218986  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 20408573 - 20408507
Alignment:
Q  74 gtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaatatt 140  Q
    ||||||||||| ||||||  ||||| |||||| ||||||||| || |||||||||||||||||||||    
T  20408573 gtaattattcggtattttaacggttaaagtgagtagtaactttggtgaattagttggtaagaatatt 20408507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 18621473 - 18621550
Alignment:
Q  74 gtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaatattcagctcattaa 151  Q
    ||||||||||||||||||| | |||||||||  ||||||| | || |||||||||||||||||| || ||| ||||||    
T  18621473 gtaattattcgttattttgacagtttaagtgtgtagtaaccttggtgaattagttggtaagaatgttgagcccattaa 18621550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 24243807 - 24243915
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    ||||||||||| || | ||||||||| |||||||  ||||||||||||||||||  | |||||||||   ||||||||  | |||||||||||||||| |    
T  24243807 aagttactagtaagatggggtaattatttagagatggtaattattcgttattttaacagtttaagtgtggagtaactt-cgtgaattagttggtaagatt 24243905  T
Q  138 attcagctca 147  Q
    ||| ||||||    
T  24243906 attgagctca 24243915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 21682198 - 21682144
Alignment:
Q  97 tttaagtgaatagtaacttaggggaattagttggtaagaatattcagctcattaa 151  Q
    ||||||||| ||||||||| |  ||||||||||||||||||||| | ||||||||    
T  21682198 tttaagtgagtagtaactttgatgaattagttggtaagaatattgatctcattaa 21682144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 13222252 - 13222325
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagta 111  Q
    ||||||||||| |||| ||||||||| || ||||   |||||||||| ||||||  |||||||||||| |||||    
T  13222252 aagttactagtaagtttgggtaattattttgagatgataattattcggtattttaacggtttaagtgagtagta 13222325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 21423872 - 21423820
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattt 90  Q
    |||||||||||||| |  |||||||| |||||||| |||| ||||||||||||    
T  21423872 aagttactagtgagatgaggtaattatttagagacggtaactattcgttattt 21423820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 3e-31; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 11773553 - 11773665
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    |||||||||||||||| | ||||||| |||||||||||||||||||| ||||||  |||||||||||| ||||||||| || ||||||||||||||||||    
T  11773553 aagttactagtgagttggagtaattatttagagacagtaattattcgatattttaacggtttaagtgagtagtaactttggtgaattagttggtaagaat 11773652  T
Q  138 attcagctcatta 150  Q
    ||| ||| |||||    
T  11773653 attgagcccatta 11773665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 3169790 - 3169892
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    ||||||||||| || | ||||||||| |||||||| || |||||||||||||||| | |||||||||  ||||||||| || ||| |||||| |||||||    
T  3169790 aagttactagtaagatggggtaattatttagagacggtgattattcgttattttgacagtttaagtgtgtagtaactttggagaactagttgctaagaat 3169889  T
Q  138 att 140  Q
    |||    
T  3169890 att 3169892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 8326712 - 8326814
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    ||||||||||||||||  |||||||| |||| ||| ||||| ||||||||||||| |||| ||||||| ||||||| |  | ||||||||| ||||||||    
T  8326712 aagttactagtgagttgaggtaattatttagtgacggtaatcattcgttattttgacggtataagtgagtagtaaccttagcgaattagttagtaagaat 8326811  T
Q  138 att 140  Q
    |||    
T  8326812 att 8326814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 29740762 - 29740849
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaatta 125  Q
    ||||||||||||||||  | ||||||||||||||| |||||||||| | |||||| |||||||||||  ||||||||| || ||||||    
T  29740762 aagttactagtgagttgagataattaattagagacggtaattattcatcattttgacggtttaagtgtgtagtaactttggtgaatta 29740849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 26007165 - 26007262
Alignment:
Q  55 gggtaattaattagagacagtaattattcgtta-ttttggcggtttaagtgaatagtaacttaggggaattagttggtaagaatattcagctcattaa 151  Q
    ||||||||| |||||||| |||||||||||||| ||||| |  ||||||||  |||||||||  | ||||||||||||||||||||| ||| ||||||    
T  26007165 gggtaattatttagagacggtaattattcgttatttttgactttttaagtgtgtagtaactttagtgaattagttggtaagaatattgagcgcattaa 26007262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 13146489 - 13146381
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    ||||||||||||| || | ||||||| |||||||  ||||||||||  | ||||  |||||||||||| |||||||||  | |||||||||  |||||||    
T  13146489 aagttactagtgattttgagtaattatttagagatggtaattattcagtgttttaacggtttaagtgagtagtaacttttgagaattagttactaagaat 13146390  T
Q  138 attcagctc 146  Q
     || |||||    
T  13146389 gttaagctc 13146381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 8323512 - 8323579
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtga 105  Q
    ||||||||||||||||  |||||||| |||| ||| ||||| |||| |||||||| |||| |||||||    
T  8323512 aagttactagtgagttgaggtaattatttagtgacggtaatcattcattattttgacggtataagtga 8323579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 16197572 - 16197495
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaactt 115  Q
    ||||||||||||||||  |||||||| ||| |||  ||||| ||||| | ||||  | ||||||||||||||||||||    
T  16197572 aagttactagtgagttgaggtaattatttacagatggtaatcattcggtgttttaacagtttaagtgaatagtaactt 16197495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 140
Target Start/End: Original strand, 20910117 - 20910150
Alignment:
Q  107 tagtaacttaggggaattagttggtaagaatatt 140  Q
    ||||||||| ||||||||||||||||||||||||    
T  20910117 tagtaactttggggaattagttggtaagaatatt 20910150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 13761278 - 13761354
Alignment:
Q  75 taattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaatattcagctcattaa 151  Q
    ||||||||| |||||||| || |||| |||  ||||||||| || || ||||||||||| |||||| ||| ||||||    
T  13761278 taattattcattattttgacgttttaggtgtgtagtaactttggtgacttagttggtaaaaatattgagcccattaa 13761354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 13452095 - 13452154
Alignment:
Q  65 ttagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaatt 124  Q
    |||||||| ||||||| |||||||||||  ||||||||||  ||||||||| || |||||    
T  13452095 ttagagacggtaattagtcgttattttgatggtttaagtgtgtagtaactttggtgaatt 13452154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 18830187 - 18830300
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    |||||||||||||| | ||||||||| |||||||||||||||||||||||||||| |||||||||||  ||||||||| || ||| |||||| |||||||    
T  18830187 aagttactagtgagatggggtaattatttagagacagtaattattcgttattttgacggtttaagtgtgtagtaactttggtgaaatagttgataagaat 18830286  T
Q  138 attcagctcattaa 151  Q
    ||| ||| ||||||    
T  18830287 attgagcccattaa 18830300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 23241666 - 23241779
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    |||||||||||||||| ||||||||| || ||||| ||||| ||||||||||||| ||||||| |||  ||||||||  || ||||||||||||||||||    
T  23241666 aagttactagtgagttggggtaattatttggagacggtaataattcgttattttgacggtttacgtgtgtagtaactatggtgaattagttggtaagaat 23241765  T
Q  138 attcagctcattaa 151  Q
     || ||| ||||||    
T  23241766 gttgagcccattaa 23241779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 23539832 - 23539945
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    ||||||||||  |||| | ||||||| |||||| | ||||||||||| ||||||  |||||||||||| ||||||| | || |||||||||||||||| |    
T  23539832 aagttactagaaagttggagtaattatttagaggcggtaattattcggtattttaacggtttaagtgagtagtaaccttggtgaattagttggtaagatt 23539931  T
Q  138 attcagctcattaa 151  Q
    ||| ||| ||||||    
T  23539932 attgagcccattaa 23539945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 24625467 - 24625355
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    ||||||||||||||||  |||||||||||||||||| | |||||| ||||||||   |||||||| |  ||||||| | |||||||||||||||| ||||    
T  24625467 aagttactagtgagttgtggtaattaattagagacacttattatttgttattttaatggtttaagagtgtagtaac-tcggggaattagttggtaggaat 24625369  T
Q  138 attcagctcattaa 151  Q
    ||| ||| ||||||    
T  24625368 attgagcccattaa 24625355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 16090870 - 16090951
Alignment:
Q  58 taattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaatatt 140  Q
    |||||| |||||||||||||||||||  |||||| | ||||||||||| |||||||||  | |||||| ||||||||||||||    
T  16090870 taattatttagagacagtaattattcagtattttagtggtttaagtgagtagtaactt-cgtgaattaattggtaagaatatt 16090951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 23543035 - 23542981
Alignment:
Q  38 aagttactagtgagttagggtaattaa-ttagagacagtaattattcgttatttt 91  Q
    |||||| ||||||||| |||||||||| |||||||| |||| |||||||||||||    
T  23543035 aagttattagtgagttggggtaattaaattagagacggtaactattcgttatttt 23542981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 17610261 - 17610312
Alignment:
Q  40 gttactagtgagttagggtaattaattagagacagtaattattcgttatttt 91  Q
    ||||| |||||| | |||||||||||||||||| || | |||||||||||||    
T  17610261 gttaccagtgagatggggtaattaattagagacggtgaatattcgttatttt 17610312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 22853310 - 22853373
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaa 101  Q
    |||||||||||||||||| ||||||| |||||||  || |||||||| | |||| |||| ||||    
T  22853310 aagttactagtgagttagagtaattatttagagatggtgattattcggtgttttagcggattaa 22853373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 23811277 - 23811234
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattat 81  Q
    ||||||||||| |||| || ||||||||||||||| ||||||||    
T  23811277 aagttactagtaagtttggataattaattagagacggtaattat 23811234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 25680352 - 25680465
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||  ||||||| |  | ||||||||||||||||||    
T  25680352 aagttactagtgagttggggtaattaattagagatagtaattattcattattttgacggtttaagtgtgtagtaaccttcgtgaattagttggtaagaat 25680451  T
Q  138 attcagctcattaa 151  Q
    ||| ||||| ||||    
T  25680452 attgagctcgttaa 25680465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 25688656 - 25688769
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||  ||||||| |  | ||||||||||||||||||    
T  25688656 aagttactagtgagttggggtaattaattagagatagtaattattcattattttgacggtttaagtgtgtagtaaccttcgtgaattagttggtaagaat 25688755  T
Q  138 attcagctcattaa 151  Q
    ||| ||||| ||||    
T  25688756 attgagctcgttaa 25688769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 16218490 - 16218603
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    |||||||| ||||||| ||||||||| |||||||| ||||||||||| ||||||  |||||||||||| ||||||||| ||  |||||||||||||||||    
T  16218490 aagttacttgtgagttggggtaattatttagagacggtaattattcgatattttaacggtttaagtgagtagtaactttggtaaattagttggtaagaat 16218589  T
Q  138 attcagctcattaa 151  Q
    ||| ||| ||||||    
T  16218590 attgagcccattaa 16218603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 41 - 151
Target Start/End: Complemental strand, 13440716 - 13440606
Alignment:
Q  41 ttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaatatt 140  Q
    ||||||||||||| ||||||||| ||| |||||||||||||||||||||||| | |||||||||  ||||||||  ||  ||||||||||||||||||||    
T  13440716 ttactagtgagttggggtaattatttaaagacagtaattattcgttattttgacagtttaagtgtgtagtaactgtggtaaattagttggtaagaatatt 13440617  T
Q  141 cagctcattaa 151  Q
     ||| ||||||    
T  13440616 gagcccattaa 13440606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 5347996 - 5347884
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    ||||||||||||||||  |||||||| |||||||| ||||||| |||||||||||  ||||||||||  |||||||||  |||||||||||| |||||||    
T  5347996 aagttactagtgagttgaggtaattatttagagacggtaattaatcgttattttgaaggtttaagtgtgtagtaactt-tgggaattagttgataagaat 5347898  T
Q  138 attcagctcattaa 151  Q
    ||| ||| ||||||    
T  5347897 attgagcccattaa 5347884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 19659383 - 19659492
Alignment:
Q  41 ttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaatatt 140  Q
    ||||||||||||| ||||||||| |||||||  ||||||||||  ||||||| |||||||||||| |||||||||| |  |||| |||||||||||| ||    
T  19659383 ttactagtgagttggggtaattatttagagatggtaattattcagtattttgacggtttaagtgagtagtaacttacgaaaattggttggtaagaatgtt 19659482  T
Q  141 cagctcatta 150  Q
     ||| |||||    
T  19659483 gagcccatta 19659492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 9e-19
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 19631473 - 19631572
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    |||||||||||||||| ||||||||| |||||||  ||||| |||||  |||||| |||||||||||| ||||||||||||  |||||||  ||||||||    
T  19631473 aagttactagtgagttggggtaattatttagagatggtaataattcggcattttgacggtttaagtgagtagtaacttaggaaaattagtaagtaagaat 19631572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 2546626 - 2546728
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    |||||||||||  ||| ||||||||| |||||||| ||||||||| | ||||||   ||||||||| | ||||||||| || ||||||||||||||||||    
T  2546626 aagttactagtaggttggggtaattatttagagacggtaattatttggtattttaagggtttaagttagtagtaactttggtgaattagttggtaagaat 2546725  T
Q  138 att 140  Q
    |||    
T  2546726 att 2546728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 10935051 - 10934969
Alignment:
Q  69 agacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaatattcagctcattaa 151  Q
    |||||||| |||||| |||||||| |||||||||||  ||||||||| || ||||||||||||||||||||| ||| ||||||    
T  10935051 agacagtagttattcattattttgacggtttaagtgtgtagtaactttggtgaattagttggtaagaatattgagcacattaa 10934969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 15540591 - 15540478
Alignment:
Q  38 aagttactagtgagttaggg-taattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaa 136  Q
    |||||||||||||||| ||| |||||| |||||||  ||||||||||||||||| | |||||||||||| || ||||||  | |||||||||||||||||    
T  15540591 aagttactagtgagtttggggtaattatttagagatggtaattattcgttattt-gacggtttaagtgagtattaacttttgagaattagttggtaagaa 15540493  T
Q  137 tattcagctcattaa 151  Q
    | || ||| ||||||    
T  15540492 tgttaagcccattaa 15540478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 4814475 - 4814363
Alignment:
Q  40 gttactagtgagttagggtaattaatta-gagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaata 138  Q
    ||||||||||||||  ||| |||| ||| ||||| ||| ||||||||||||||| |||| ||| ||  ||||| ||| |  ||||||| |||||||||||    
T  4814475 gttactagtgagttgtggttattatttaagagacggtagttattcgttattttgacggtctaaatgtgtagtagctttgctgaattaggtggtaagaata 4814376  T
Q  139 ttcagctcattaa 151  Q
    || ||||||||||    
T  4814375 ttgagctcattaa 4814363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 10726679 - 10726604
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaac 113  Q
    ||||||||||||| || | |||||||||||| |||  |||||||||||||||||| | ||| |||||| |||||||    
T  10726679 aagttactagtgaatttgagtaattaattagggacgataattattcgttattttgacagttcaagtgagtagtaac 10726604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 4657316 - 4657262
Alignment:
Q  38 aagttactagtgagttagggtaatt-aattagagacagtaattattcgttatttt 91  Q
    |||||||||||||||| |||||||| ||| |||||||| ||||||||||||||||    
T  4657316 aagttactagtgagtttgggtaattaaataagagacagaaattattcgttatttt 4657262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 11832526 - 11832617
Alignment:
Q  57 gtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaatattcagctcattaa 151  Q
    |||||||||||||||||||||||||| |||| |||| ||| |||||||| ||||||| | || ||||||||| | ||||||||| ||| ||||||    
T  11832526 gtaattaattagagacagtaattatttgtta-tttgacgg-ttaagtgagtagtaac-tcggtgaattagttagcaagaatattgagcacattaa 11832617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 27053008 - 27052956
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttatttt 91  Q
    ||||||||| |||||| ||||||||||||||||||||||| |||| ||||||||    
T  27053008 aagttactactgagtt-gggtaattaattagagacagtaaatatttgttatttt 27052956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 11677354 - 11677399
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattc 83  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||    
T  11677354 aagttactagtgagttgaggtaattatttagagatagtaattattc 11677399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 30098320 - 30098432
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    |||||||||||||| | |||||||||||||||| | || | ||||| ||||||| |  | |||||||  ||||||| |  | ||| ||||| ||||||||    
T  30098320 aagttactagtgagatggggtaattaattagaggcggtgaatattcattatttttgtcggttaagtgtgtagtaac-tctgtgaaatagttagtaagaat 30098418  T
Q  138 attcagctcattaa 151  Q
    ||| ||||||||||    
T  30098419 attgagctcattaa 30098432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 1276543 - 1276503
Alignment:
Q  75 taattattcgttattttggcggtttaagtgaatagtaactt 115  Q
    |||||||||||||||||| |||||||||||  |||||||||    
T  1276543 taattattcgttattttgacggtttaagtgtgtagtaactt 1276503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 370871 - 370985
Alignment:
Q  38 aagttactagtgagttagggtaattaattag-agacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaa 136  Q
    ||||| |||||||||||||||||||| |||| |||| ||||||||||||||||||| ||||||| |||  ||||||||| || |||||||||||||||||    
T  370871 aagttcctagtgagttagggtaattatttaggagacggtaattattcgttattttgacggtttatgtgtgtagtaactttggtgaattagttggtaagaa 370970  T
Q  137 tattcagctcattaa 151  Q
    |||| | ||||||||    
T  370971 tattgaactcattaa 370985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 15692766 - 15692664
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    |||||| |||||||||  |||||||| |||||||||||||||||||| |||||||  ||||||||||| ||||||||| || ||||||||||||||||||    
T  15692766 aagttattagtgagttgaggtaattatttagagacagtaattattcggtattttgatggtttaagtgagtagtaactttggtgaattagttggtaagaat 15692667  T
Q  138 att 140  Q
    |||    
T  15692666 att 15692664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 21982560 - 21982448
Alignment:
Q  38 aagttactagtgagttagggtaattaatt-agagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaa 136  Q
    ||||||||||||||||| |||||||| || |||||| |||| |||||||||||||| |||||||||||  |||||||||  || ||||||||||||||||    
T  21982560 aagttactagtgagttatggtaattactttagagacggtaactattcgttattttgacggtttaagtgtgtagtaactt--ggtaattagttggtaagaa 21982463  T
Q  137 tattcagctcattaa 151  Q
    |||| ||| ||||||    
T  21982462 tattgagcccattaa 21982448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 41 - 151
Target Start/End: Complemental strand, 15712018 - 15711908
Alignment:
Q  41 ttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaatatt 140  Q
    ||||||||||||| || | |||||||| | |||||| ||||||||||||||| | |||||||||| ||||||||| || |||||||||||||||| | ||    
T  15712018 ttactagtgagttgggatgattaattatacacagtagttattcgttattttgacagtttaagtgagtagtaactttggagaattagttggtaagagtgtt 15711919  T
Q  141 cagctcattaa 151  Q
     ||||||||||    
T  15711918 gagctcattaa 15711908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 16571790 - 16571689
Alignment:
Q  38 aagttactagtgagttagggtaattaatt-agagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaa 136  Q
    |||||||||||||||||||||||||| || | |||| ||||||||| ||||||||| | |||||||||| ||| || || || |||||||||||||||||    
T  16571790 aagttactagtgagttagggtaattattttatagacggtaattatttgttattttgacagtttaagtgagtagaaattttggtgaattagttggtaagaa 16571691  T
Q  137 ta 138  Q
    ||    
T  16571690 ta 16571689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 11776809 - 11776701
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    ||||||||| |||||| ||||||||| ||| |||| | ||||||||||||||||| ||||||||| |  ||||||||| |  |||||| |||||||||||    
T  11776809 aagttactattgagttggggtaattatttaaagacggaaattattcgttattttgacggtttaagagtgtagtaactttgatgaattacttggtaagaat 11776710  T
Q  138 attcagctc 146  Q
    ||| |||||    
T  11776709 attgagctc 11776701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 28801401 - 28801291
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    ||||||||||||||||  ||||||||||||||||| ||| |||||||||||||  |  | |||||||| ||||||| | || ||||||| | ||||||||    
T  28801401 aagttactagtgagttgtggtaattaattagagacggtatttattcgttattt--gatggttaagtgagtagtaac-tcggtgaattagctagtaagaat 28801305  T
Q  138 attcagctcattaa 151  Q
    ||| ||||||||||    
T  28801304 attgagctcattaa 28801291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 9253262 - 9253166
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaag 134  Q
    ||||||||||| |||| ||||||| | ||||||| |||||||||||| | ||||  |||||||||||| || ||||||  | ||||||||| |||||    
T  9253262 aagttactagtaagttggggtaatcatttagagatagtaattattcggtgttttaacggtttaagtgagtattaacttttgcgaattagttagtaag 9253166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 9273233 - 9273137
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaag 134  Q
    |||||||||||||||| ||||||||| |||||||   |||||||||| | ||||  | |||||||||| || ||||||  | ||||||||| |||||    
T  9273233 aagttactagtgagttggggtaattatttagagatgttaattattcggtgttttaacagtttaagtgagtattaacttttgcgaattagttagtaag 9273137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 19890193 - 19890097
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaag 134  Q
    |||||||||||||||| ||||||||| |||||||   |||||||||| | ||||  |||||||||||| || | ||||  | ||||||||| |||||    
T  19890193 aagttactagtgagttggggtaattatttagagatgataattattcggtgttttaacggtttaagtgagtaattacttttgagaattagttagtaag 19890097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 9245519 - 9245442
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaactt 115  Q
    |||||||||||||||| | ||||||| ||||||| | |||||||||| || |||   |||||| |||| |||||||||    
T  9245519 aagttactagtgagttggagtaattatttagagataataattattcgataatttaatggtttaggtgagtagtaactt 9245442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 17960460 - 17960364
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaag 134  Q
    |||||| ||||||||| ||||||||| |||||||   |||||| ||  | ||||  |||||||||||| |||||||||  | |||||||||| ||||    
T  17960460 aagttattagtgagttggggtaattatttagagattataattactcagtgttttaacggtttaagtgagtagtaacttttgagaattagttgttaag 17960364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 754 - 867
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    |||||||||||||||| || |||||| |||||||  ||||||||||| ||||||  |||||||||||| |||||||||  | |||||||||| |||||||    
T  754 aagttactagtgagttgggataattatttagagatggtaattattcggtattttaacggtttaagtgagtagtaacttttgtgaattagttgctaagaat 853  T
Q  138 attcagctcattaa 151  Q
    ||| ||||||||||    
T  854 attaagctcattaa 867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 1e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 28774839 - 28774736
Alignment:
Q  38 aagttactagtgagttagggtaattaa-ttagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaa 136  Q
    ||||||| ||||||||  ||||||||  |||||||| ||||||||||||||||||| |||||||||||  ||||||||| || |||||||||||||||||    
T  28774839 aagttaccagtgagttgaggtaattatcttagagacggtaattattcgttattttgacggtttaagtgtgtagtaactttggtgaattagttggtaagaa 28774740  T
Q  137 tatt 140  Q
    ||||    
T  28774739 tatt 28774736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 21654808 - 21654696
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    |||||| ||||||||| | ||||||| |||||||| ||||||||||| ||||||| | |||||||||| |||||||||  | ||||||||||||||||||    
T  21654808 aagttaatagtgagtttgagtaattatttagagacggtaattattcggtattttgacagtttaagtgagtagtaacttttgagaattagttggtaagaat 21654709  T
Q  138 attcagctcatta 150  Q
     || ||| |||||    
T  21654708 gtttagcccatta 21654696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 27354129 - 27354017
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    ||||||||||| |||| ||||||||| ||| |||  ||||||||||| ||||||| || ||||||||  ||||||||| |||||| || |||||||||||    
T  27354129 aagttactagtaagtt-gggtaattatttatagatcgtaattattcgctattttgacgatttaagtgtgtagtaactttggggaaatatttggtaagaat 27354031  T
Q  138 attcagctcattaa 151  Q
     || ||| ||||||    
T  27354030 gttaagcccattaa 27354017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 18995841 - 18995781
Alignment:
Q  41 ttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaa 101  Q
    |||||||||||||  ||||||||||||||||| |||| |||||||||||||  ||||||||    
T  18995841 ttactagtgagttgtggtaattaattagagacggtaactattcgttattttaacggtttaa 18995781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 29744271 - 29744315
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattatt 82  Q
    |||||||||||||||| ||||||||| ||||||| ||||||||||    
T  29744271 aagttactagtgagttggggtaattatttagagatagtaattatt 29744315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 34896302 - 34896379
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaactt 115  Q
    ||||||||| |||||| ||||||||| ||||||   ||||||| ||| | ||||  |||||||||||| |||||||||    
T  34896302 aagttactaatgagttggggtaattatttagagttggtaattaatcggtgttttaacggtttaagtgagtagtaactt 34896379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0964 (Bit Score: 51; Significance: 1e-20; HSPs: 1)
Name: scaffold0964
Description:

Target: scaffold0964; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 41 - 151
Target Start/End: Complemental strand, 2768 - 2658
Alignment:
Q  41 ttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaatatt 140  Q
    |||| |||||||| ||||||||||||| |||| |||||||||| |||||||| |||||||||||  ||||| | | || |||| ||||||||| ||||||    
T  2768 ttacaagtgagttggggtaattaattaaagacggtaattattcattattttgacggtttaagtgtgtagtagccttggtgaatcagttggtaaaaatatt 2669  T
Q  141 cagctcattaa 151  Q
    |||| ||||||    
T  2668 cagcccattaa 2658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 51; Significance: 1e-20; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 29755 - 29865
Alignment:
Q  41 ttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaatatt 140  Q
    |||||||||||||  |||||||| |||||||  ||||||||| | |||||| |||| |||||||| |||||||||  | |||||||||||||||||| ||    
T  29755 ttactagtgagttgaggtaattatttagagattgtaattatttggtattttagcggattaagtgagtagtaacttttgagaattagttggtaagaatgtt 29854  T
Q  141 cagctcattaa 151  Q
     ||||||||||    
T  29855 aagctcattaa 29865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 1e-20; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 19724930 - 19725044
Alignment:
Q  38 aagttactagtgagttagggtaattaatt-agagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaa 136  Q
    |||||||||||| ||| ||||||||| || |||||| |||||||||  |||||||| |||||||||||  ||||||||| || |||||||||||||| ||    
T  19724930 aagttactagtgggttggggtaattattttagagacggtaattattttttattttgacggtttaagtgtgtagtaactttggtgaattagttggtaacaa 19725029  T
Q  137 tattcagctcattaa 151  Q
    |||| ||| ||||||    
T  19725030 tattgagcccattaa 19725044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 14566124 - 14566226
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    |||| ||||||||||| ||||||||| ||||||||  ||||||||| |||| ||| ||  |||||||  ||||||||| || ||||||||||||||||||    
T  14566124 aagtaactagtgagttggggtaattatttagagacgataattattcattatgttgacgacttaagtgtgtagtaactttggtgaattagttggtaagaat 14566223  T
Q  138 att 140  Q
    |||    
T  14566224 att 14566226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 23293784 - 23293879
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaa 133  Q
    |||||||||||||||| | ||||||| |||||||   |||||||||| ||||||| |||||||||||| |||||||||  |  |||||||||||||    
T  23293784 aagttactagtgagttggagtaattatttagagatgataattattcggtattttgacggtttaagtgagtagtaacttttgaaaattagttggtaa 23293879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 13562724 - 13562822
Alignment:
Q  50 agttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaatattcagctcat 148  Q
    |||| ||||||||| ||||| || |||||||||  |||||||||| ||||||||||  ||| | || || ||||||||||||||||||||| |||||||    
T  13562724 agttggggtaattatttagaaacggtaattatttattattttggcagtttaagtgagaagtgattttggtgaattagttggtaagaatattgagctcat 13562822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 16308175 - 16308287
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    ||||||||||||||||||| || ||| ||| |||| || |||||||||||||||| | |||| || |  |||||| || || ||||||||||||||||||    
T  16308175 aagttactagtgagttagg-tatttatttaaagacggtgattattcgttattttgacagtttcagcgtgtagtaaatttggtgaattagttggtaagaat 16308273  T
Q  138 attcagctcattaa 151  Q
    ||| ||| ||||||    
T  16308274 attgagcccattaa 16308287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 19969262 - 19969357
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaaga 135  Q
    |||||||||||||||| ||||||||| |||||||| || |||||| | |||||||  ||||||||||| ||||||||| || ||||||||| ||||||    
T  19969262 aagttactagtgagttggggtaattatttagagacggtgattatttg-tattttgaaggtttaagtgagtagtaactt-ggtgaattagtttgtaaga 19969357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 10975501 - 10975425
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaact 114  Q
    |||||||| ||||| | ||||||||| ||||||||||||| |||||||||||| | |||||||||||  ||||||||    
T  10975501 aagttactggtgagattgggtaattatttagagacagtaactattcgttatttcgacggtttaagtgtgtagtaact 10975425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 19980799 - 19980701
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaa--tagtaacttaggggaattagttggtaaga 135  Q
    ||||||||| ||||||  |||||||| ||||||||  ||||||||||||||||||  |||||||||| |  ||||||||| || ||||||||||||||||    
T  19980799 aagttactaatgagttgaggtaattatttagagacgataattattcgttattttgatggtttaagtgtacgtagtaactt-ggtgaattagttggtaaga 19980701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 14894395 - 14894282
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    |||||||||||||| | |  |||||| ||||||||  ||||||||||| |||||| |||||| | ||  |||||| || || |||||||||| || ||||    
T  14894395 aagttactagtgagatggaataattatttagagacgttaattattcgtcattttgacggtttgattgtgtagtaattttggtgaattagttgataggaat 14894296  T
Q  138 attcagctcattaa 151  Q
    ||||||| ||||||    
T  14894295 attcagcccattaa 14894282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 18557993 - 18557882
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    ||||||||||||||||   ||||||||||||||||||| | |||||||||||||  ||| ||||||||  |||||| | ||  ||||| |||||||||||    
T  18557993 aagttactagtgagttgtagtaattaattagagacagtgaatattcgttattttaacgg-ttaagtgagaagtaac-tcggtaaattaattggtaagaat 18557896  T
Q  138 attcagctcattaa 151  Q
    ||| ||| ||||||    
T  18557895 attgagcccattaa 18557882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 19976823 - 19976922
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    |||||| ||||||||| ||||||||| ||||| |   ||||||||||||||||||  ||| ||||||| |||||||||  |  ||||||||| |||||||    
T  19976823 aagttattagtgagttggggtaattatttagaaatgttaattattcgttattttgatggtctaagtgagtagtaacttttgaaaattagttgttaagaat 19976922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 12347044 - 12347110
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtg 104  Q
    |||||||||||||| |  |||||||| ||||||||| ||| |||| ||||||||| |||||||||||    
T  12347044 aagttactagtgagatgaggtaattatttagagacaataactatttgttattttgacggtttaagtg 12347110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 14355626 - 14355561
Alignment:
Q  40 gttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtga 105  Q
    |||||||||||||| ||||||||| |||||||  ||||||||||| | ||||| | ||||||||||    
T  14355626 gttactagtgagttggggtaattatttagagatggtaattattcggtgttttgacagtttaagtga 14355561  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 17925197 - 17925271
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaa 112  Q
    |||||||||||||| |  |||||||| |||||||   |||||||||  ||||||| |||||||||||| ||||||    
T  17925197 aagttactagtgagatgaggtaattatttagagatgataattattccgtattttgacggtttaagtgagtagtaa 17925271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 23301140 - 23301094
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcg 84  Q
    |||||||||||||||| ||||||||| |||||||  |||||||||||    
T  23301140 aagttactagtgagttggggtaattatttagagatggtaattattcg 23301094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 23224249 - 23224321
Alignment:
Q  41 ttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaac 113  Q
    |||||||||| || ||||||||||||| |||| ||| |||| ||  |||||  |||||||||||| |||||||    
T  23224249 ttactagtgaatttgggtaattaattatagactgtagttatccgacattttaacggtttaagtgagtagtaac 23224321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 18028058 - 18028157
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    ||||||| |||| ||| | ||||||| |||||||   |||||||||| ||| ||   ||||||||||| |||||||||  | |||||||||| |||||||    
T  18028058 aagttaccagtgggtttgagtaattatttagagatgataattattcggtatatttatggtttaagtgagtagtaacttttgagaattagttgataagaat 18028157  T

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Target: scaffold0014 (Bit Score: 48; Significance: 9e-19; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 48; E-Value: 9e-19
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 202438 - 202537
Alignment:
Q  41 ttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaatatt 140  Q
    ||||||||||| | ||||||||| ||| |||| |||||||||  |||||||| |||||||||||  ||||||||| || |||||||||| ||||||||||    
T  202438 ttactagtgagatggggtaattatttaaagacggtaattatttattattttgacggtttaagtgtgtagtaactttggtgaattagttgctaagaatatt 202537  T

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Target: scaffold0228 (Bit Score: 47; Significance: 3e-18; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 6551 - 6652
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    ||||||||||||||||  |||||||||||| |||| |||| ||||| |||||||  |||||||||||  ||||||| | || ||||||||||||||||||    
T  6551 aagttactagtgagttgtggtaattaattaaagacggtaactattcattattttaacggtttaagtgtgtagtaac-tcggtgaattagttggtaagaat 6649  T
Q  138 att 140  Q
    |||    
T  6650 att 6652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 14133 - 14234
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    ||||||||||||||||  |||||||||||| |||| |||| ||||| |||||||  |||||||||||  ||||||| | || ||||||||||||||||||    
T  14133 aagttactagtgagttgtggtaattaattaaagacggtaactattcattattttaacggtttaagtgtgtagtaac-tcggtgaattagttggtaagaat 14231  T
Q  138 att 140  Q
    |||    
T  14232 att 14234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 24085 - 24186
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    ||||||||||||||||  |||||||||||| |||| |||| ||||| |||||||  |||||||||||  ||||||| | || ||||||||||||||||||    
T  24085 aagttactagtgagttgtggtaattaattaaagacggtaactattcattattttaacggtttaagtgtgtagtaac-tcggtgaattagttggtaagaat 24183  T
Q  138 att 140  Q
    |||    
T  24184 att 24186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 47; Significance: 3e-18; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 8469 - 8355
Alignment:
Q  38 aagttactagtgagttagggtaattaatta-gagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaa 136  Q
    ||||||||| | |||| |||||| || ||| ||||| | |||||||||||||||||  ||||||||||  ||||||||| || |||||||||||||||||    
T  8469 aagttactaattagtttgggtaactatttaagagacggcaattattcgttattttgatggtttaagtgtgtagtaactttggtgaattagttggtaagaa 8370  T
Q  137 tattcagctcattaa 151  Q
    |||| ||| ||||||    
T  8369 tattgagcccattaa 8355  T

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Target: chr5 (Bit Score: 43; Significance: 9e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 19315959 - 19316072
Alignment:
Q  38 aagttactagtgagttagggtaattaatta-gagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaa 136  Q
    |||||||||||||||| ||| ||||| ||| ||||||||||||||| ||||||||  ||||||| |||  ||||||||| || ||||||||| || ||||    
T  19315959 aagttactagtgagtt-gggcaattatttaagagacagtaattatttgttattttaacggtttatgtgtgtagtaactttggtgaattagtttgtgagaa 19316057  T
Q  137 tattcagctcattaa 151  Q
    |||| ||| ||||||    
T  19316058 tattgagcccattaa 19316072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 17364682 - 17364571
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    |||||||||||||||| || |||||| ||| |||  ||||||||||| | ||||| |||||||||||| |||||| ||  ||||||||||| ||||||||    
T  17364682 aagttactagtgagtt-ggataattatttatagagggtaattattcggtgttttgacggtttaagtgagtagtaagttttgggaattagttagtaagaat 17364584  T
Q  138 attcagctcatta 150  Q
     || ||| |||||    
T  17364583 gttgagcccatta 17364571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 17170174 - 17170074
Alignment:
Q  39 agttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaata 138  Q
    ||||||||||||||| || |||||||||||||||  ||||||||||||| |||| ||| |||| ||| ||  ||||| |  |||||||||||||| ||||    
T  17170174 agttactagtgagttgggataattaattagagacgataattattcgtta-tttgacgggttaattgagtaagaactttgatgaattagttggtaacaata 17170076  T
Q  139 tt 140  Q
    ||    
T  17170075 tt 17170074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 10176251 - 10176351
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    |||||||||||||||| | ||||||| ||||| || | |||||||| ||| |||  |||||||||| | ||||||| | || |||||||||||||| |||    
T  10176251 aagttactagtgagttggagtaattatttagatacggcaattattcctta-tttaacggtttaagtaagtagtaacattggtgaattagttggtaaaaat 10176349  T
Q  138 at 139  Q
    ||    
T  10176350 at 10176351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 20728322 - 20728210
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    |||||||||||  ||| ||||||||| || ||||  | ||||||||| |||||  | ||||||||||| |||||||||  | ||||||||| ||||||||    
T  20728322 aagttactagttggttggggtaattatttcgagatggaaattattcgctatttcagtggtttaagtgagtagtaacttttgagaattagttagtaagaat 20728223  T
Q  138 attcagctcatta 150  Q
     || || ||||||    
T  20728222 gttgagttcatta 20728210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 26728320 - 26728257
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaag 102  Q
    |||||||| ||||||| ||||||||| |||||||   |||||||||||||||||| |||||||||    
T  26728320 aagttact-gtgagttggggtaattatttagagatgataattattcgttattttgacggtttaag 26728257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 24194814 - 24194720
Alignment:
Q  45 tagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaatatt 140  Q
    |||||||||  |||||||| ||||  || || |||||||||||||| | ||||||| |||| ||||||  | || |||||||||||||||||||||    
T  24194814 tagtgagttgaggtaattatttaggaacggtcattattcgttattt-gacggtttaggtgagtagtaaacttggtgaattagttggtaagaatatt 24194720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 17969 - 18035
Alignment:
Q  74 gtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaatatt 140  Q
    |||||||||| |||||||| |||||||||||| |||||| ||  | |||||||||||||||||||||    
T  17969 gtaattattctttattttgacggtttaagtgagtagtaaattttgagaattagttggtaagaatatt 18035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 1499 - 1576
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaactt 115  Q
    |||||||||||||||| |  |||||| |||||||  ||||||||||| ||||||  |||||||||||| |||||||||    
T  1499 aagttactagtgagttggaataattatttagagatggtaattattcgatattttaacggtttaagtgagtagtaactt 1576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0412 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 3821 - 3768
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttatttt 91  Q
    ||||||||||||||||  ||||||||||||||||| |||| |||||||||||||    
T  3821 aagttactagtgagttgtggtaattaattagagacggtaactattcgttatttt 3768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 15360 - 15456
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaag 134  Q
    |||||||||||||||| ||||| ||| |||||||  ||||||||| | |||||| || | |||||||| |||||||||  | ||||||||| |||||    
T  15360 aagttactagtgagttggggtatttatttagagatggtaattattaggtattttagcagattaagtgagtagtaacttttgagaattagttagtaag 15456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 4220 - 4111
Alignment:
Q  41 ttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaatatt 140  Q
    ||||||||||||| ||||||||| |||||||   |||||||||| | ||||  | |||||||||| |||||||||  | |||||| ||  ||||||| ||    
T  4220 ttactagtgagttggggtaattatttagagatgataattattcgatgttttaacagtttaagtgagtagtaacttttgagaattaattaataagaatgtt 4121  T
Q  141 cagctcatta 150  Q
     |||||||||    
T  4120 aagctcatta 4111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 204330 - 204428
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcgttattttggcggtttaagtgaatagtaacttaggggaattagttggtaagaat 137  Q
    ||||||||| ||| ||  |||||||| || |||||  ||||||||| |||||| | |||||||||||| || ||||||  | ||||||||||||||||||    
T  204330 aagttactaatgacttgaggtaattatttggagacgataattattcattattt-gacggtttaagtgagtactaacttttgagaattagttggtaagaat 204428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 42595 - 42641
Alignment:
Q  38 aagttactagtgagttagggtaattaattagagacagtaattattcg 84  Q
    |||||||||||||||| | ||||||| |||||||| |||||||||||    
T  42595 aagttactagtgagttggagtaattatttagagacggtaattattcg 42641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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