View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5668-67 (Length: 138)
Name: Solexa-NF5668-67
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-67 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 99; Significance: 3e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 43632888 - 43633022
Alignment:
| Q |
5 |
cataggttgctgctgctaacactggtttggnnnnnnnn-ctcagacatatctctgtgtaacgttgttctcagcttcattgagaagaaagaaacatattaa |
103 |
Q |
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| T |
43632888 |
cataggttgctgctgctaacactggtttggtttttttttctcagacatatctctgtgtaacgttgttctcagcttcattgagaagaaagaaacatattaa |
43632987 |
T |
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| Q |
104 |
tggcaacaaaagccttggccttcactttttctttc |
138 |
Q |
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| T |
43632988 |
tggcaacaaaagctttggccttcactttttctttc |
43633022 |
T |
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