View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5668-68 (Length: 124)
Name: Solexa-NF5668-68
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-68 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 106; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 21550227 - 21550347
Alignment:
| Q |
3 |
agctcctagaagtgtatctagagttttatattcttgtacctataaatatcattgtacttgtcactttgaatgaaacaaattgttagttttcttgtttctg |
102 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21550227 |
agctcctagaagtgtatctagagttt-atatacttgtacctataaatatcattgtacttgtcactttgaatgaaacaaattgttagttttcttgtttctg |
21550325 |
T |
|
| Q |
103 |
attctgatagaacagatagcta |
124 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
21550326 |
attctgatagaacagattgcta |
21550347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University