View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5668-72 (Length: 129)
Name: Solexa-NF5668-72
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-72 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 91; Significance: 2e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 24729319 - 24729438
Alignment:
| Q |
10 |
gatgaatttcagaaatcttacttccctgctctttgcatgtttgtcagaaatgagnnnnnnnctttcaaagattctatatatcctcctccgcatttgattt |
109 |
Q |
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| T |
24729319 |
gatgaatttcagaaatcttacttccctgctctttgcatgtttgtcagaaatgagtttttttctttcaaagattctgtatatcctcctccacatttgattt |
24729418 |
T |
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| Q |
110 |
tcgatgcttttaacacttct |
129 |
Q |
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| T |
24729419 |
tcgatgcttttaacacttct |
24729438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 5e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 28281119 - 28281235
Alignment:
| Q |
10 |
gatgaatttcagaaatcttacttccctgctctttgcatgtttgtcagaaatgagnnnnnnnctttcaaagattctatatatcctcctccgcatttgattt |
109 |
Q |
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| T |
28281119 |
gatgaatttcagaaatcgtacgccctggctctttgcatgttcgttggaaatgagtattttgctttcaaagattctgtatatcctcctccgcatttgattt |
28281218 |
T |
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| Q |
110 |
tcgatgcttttaacact |
126 |
Q |
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| T |
28281219 |
tcgatgcttttaacact |
28281235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 28289232 - 28289342
Alignment:
| Q |
12 |
tgaatttcagaaatcttacttccctgctctttgcatgtttgtcagaaatgagnnnnnnnctttcaaagattctatatatcctcctccgcatttgattttc |
111 |
Q |
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||||||||||||| ||||| ||| |||||||||||||| ||| ||||||| ||||||||||||| ||||||||||| |||||||||||||| |
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| T |
28289232 |
tgaatttcagaaaccttacgccccggctctttgcatgttcgtccaaaatgagattttcgctttcaaagattccgtatatcctccttcgcatttgattttc |
28289331 |
T |
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| Q |
112 |
gatgcttttaa |
122 |
Q |
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| T |
28289332 |
aatgctcttaa |
28289342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 28747083 - 28746970
Alignment:
| Q |
12 |
tgaatttcagaaatcttacttccctgctctttgcatgtttgtcagaaatgagnnnnnnnctttcaaagattctatatatcctcctccgcatttgattttc |
111 |
Q |
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||||||||||||| ||||| |||||||||||||||||| || |||||||| || ||||||||||| |||||||||||||| ||||||||||| |
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| T |
28747083 |
tgaatttcagaaaccttacgcccctgctctttgcatgttcatcggaaatgagtattttgctctcaaagattctgtatatcctcctccgtatttgattttc |
28746984 |
T |
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| Q |
112 |
gatgcttttaacac |
125 |
Q |
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|||||||||||||| |
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| T |
28746983 |
gatgcttttaacac |
28746970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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