View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5668-73 (Length: 149)

Name: Solexa-NF5668-73
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5668-73
Solexa-NF5668-73
[»] chr4 (1 HSPs)
chr4 (14-108)||(21549760-21549854)
[»] scaffold0006 (1 HSPs)
scaffold0006 (56-108)||(1416-1468)
[»] chr3 (2 HSPs)
chr3 (57-89)||(16263290-16263322)
chr3 (57-108)||(9602974-9603025)
[»] chr7 (2 HSPs)
chr7 (57-108)||(21987829-21987880)
chr7 (57-108)||(49090598-49090649)
[»] chr6 (1 HSPs)
chr6 (56-103)||(24077844-24077891)


Alignment Details
Target: chr4 (Bit Score: 91; Significance: 2e-44; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 21549760 - 21549854
Alignment:
Q  14 aggagaaaatggtagttatttcgttcaagttgtagtttcctagatgaagatggttttgagagtgggggtgcactagcactcacaagttggaaacc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21549760 aggagaaaatggtagttatttcgttcaagttgtagtttcctagatgaagatggttatgagagtgggggtgcactagcactcacaagttggaaacc 21549854  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 1468 - 1416
Alignment:
Q  56 gatgaagatggttttgagagtgggggtgcactagcactcacaagttggaaacc 108  Q
    ||||||||||||| |||||||| |||||||||||   ||||||||||| ||||    
T  1468 gatgaagatggttatgagagtgcgggtgcactagtggtcacaagttgggaacc 1416  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 16263322 - 16263290
Alignment:
Q  57 atgaagatggttttgagagtgggggtgcactag 89  Q
    ||||||||||||||||||||| |||||||||||    
T  16263322 atgaagatggttttgagagtgcgggtgcactag 16263290  T

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Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 9602974 - 9603025
Alignment:
Q  57 atgaagatggttttgagagtgggggtgcactagcactcacaagttggaaacc 108  Q
    |||||||||||| |||||||| |||||||||||   ||||||||||| ||||    
T  9602974 atgaagatggttatgagagtgcgggtgcactagtggtcacaagttgggaacc 9603025  T

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Target: chr7 (Bit Score: 28; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 21987880 - 21987829
Alignment:
Q  57 atgaagatggttttgagagtgggggtgcactagcactcacaagttggaaacc 108  Q
    |||||||||||| |||||||| |||||||||||   ||||||||||| ||||    
T  21987880 atgaagatggttatgagagtgcgggtgcactagtggtcacaagttgggaacc 21987829  T

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Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 49090649 - 49090598
Alignment:
Q  57 atgaagatggttttgagagtgggggtgcactagcactcacaagttggaaacc 108  Q
    |||||||||||| |||||||| |||||||||||   ||||||||||| ||||    
T  49090649 atgaagatggttatgagagtgcgggtgcactagtggtcacaagttgggaacc 49090598  T

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Target: chr6 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 24077891 - 24077844
Alignment:
Q  56 gatgaagatggttttgagagtgggggtgcactagcactcacaagttgg 103  Q
    ||||||||||||| |||||||| ||||||| ||||  |||||||||||    
T  24077891 gatgaagatggttatgagagtgcgggtgcattagcgatcacaagttgg 24077844  T

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